BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM10b11.yg.2.1
(554 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816424.1|CN816424 HRO4520_E12_J24ZS5 Lib AA071E1X Aven... 32 0.49
gb|M18822.1|ASTPHT3A Avena sativa type 3 phytochrome gene (... 32 0.49
emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3) 32 0.49
emb|X03243.1|ASAP4R Avena sativa mRNA for phytochrome (AP4) 32 0.49
emb|X03244.1|ASAP5R Avena sativa mRNA fragment for phytochr... 32 0.49
emb|CQ798732.1| Sequence 1 from Patent EP1411127 32 0.49
>gb|CN816424.1|CN816424 HRO4520_E12_J24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_E12_J24, mRNA sequence
Length = 450
Score = 32.2 bits (16), Expect = 0.49
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 167 gaggcagctgcagatgagga 186
|||||||| |||||||||||
Sbjct: 7 gaggcagccgcagatgagga 26
>gb|M18822.1|ASTPHT3A Avena sativa type 3 phytochrome gene (phy3), complete cds
Length = 6746
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 214 agaggatgatgaagct 229
||||||||||||||||
Sbjct: 3395 agaggatgatgaagct 3410
>emb|X03242.1|ASAP3R Avena sativa mRNA for phytochrome (AP3)
Length = 3696
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 214 agaggatgatgaagct 229
||||||||||||||||
Sbjct: 1095 agaggatgatgaagct 1110
>emb|X03243.1|ASAP4R Avena sativa mRNA for phytochrome (AP4)
Length = 3705
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 214 agaggatgatgaagct 229
||||||||||||||||
Sbjct: 1095 agaggatgatgaagct 1110
>emb|X03244.1|ASAP5R Avena sativa mRNA fragment for phytochrome (AP5)
Length = 1623
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 214 agaggatgatgaagct 229
||||||||||||||||
Sbjct: 1174 agaggatgatgaagct 1189
>emb|CQ798732.1| Sequence 1 from Patent EP1411127
Length = 3390
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 214 agaggatgatgaagct 229
||||||||||||||||
Sbjct: 1038 agaggatgatgaagct 1053
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1266
Number of Sequences: 8143
Number of extensions: 1266
Number of successful extensions: 311
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 6
length of query: 554
length of database: 4,702,463
effective HSP length: 16
effective length of query: 538
effective length of database: 4,572,175
effective search space: 2459830150
effective search space used: 2459830150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)