BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAI15h08.yg.2.1
         (557 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818648.1|CN818648  HRO4455_A07_A13ZS5 Lib AA070E1X Aven...    34   0.13 
gb|CN818851.1|CN818851  HRO4456_A07_A14ZS5 Lib AA070E1X Aven...    34   0.13 
gb|CN817281.1|CN817281  HRO4464_G05_M10ZS5 Lib AA070E1X Aven...    32   0.50 
gb|CN818330.1|CN818330  HRO4469_H05_P09ZS5 Lib AA070E1X Aven...    32   0.50 

>gb|CN818648.1|CN818648 HRO4455_A07_A13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4455_A07_A13, mRNA sequence
          Length = 807

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 434 tgctcttgacctcaaaa 450
           |||||||||||||||||
Sbjct: 668 tgctcttgacctcaaaa 652



>gb|CN818851.1|CN818851 HRO4456_A07_A14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4456_A07_A14, mRNA sequence
          Length = 729

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 434 tgctcttgacctcaaaa 450
           |||||||||||||||||
Sbjct: 668 tgctcttgacctcaaaa 652



>gb|CN817281.1|CN817281 HRO4464_G05_M10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4464_G05_M10, mRNA sequence
          Length = 575

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 426 ttccccgatgctcttg 441
           ||||||||||||||||
Sbjct: 547 ttccccgatgctcttg 562



>gb|CN818330.1|CN818330 HRO4469_H05_P09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4469_H05_P09, mRNA sequence
          Length = 798

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 199 ttgtgacatcataaac 214
           ||||||||||||||||
Sbjct: 245 ttgtgacatcataaac 230



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1351
Number of Sequences: 8143
Number of extensions: 1351
Number of successful extensions: 356
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 4
length of query: 557
length of database: 4,702,463
effective HSP length: 16
effective length of query: 541
effective length of database: 4,572,175
effective search space: 2473546675
effective search space used: 2473546675
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)