BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814790.1|CN814790 HRO4502_E06_I12ZS5 Lib AA071E1X Aven... 30 1.2
gb|CN815695.1|CN815695 HRO4514_E05_I10ZS5 Lib AA071E1X Aven... 30 1.2
gb|CN816322.1|CN816322 HRO4519_D09_H17ZS5 Lib AA071E1X Aven... 30 1.2
gb|CN819303.1|CN819303 HRO4452_D08_G16ZS5 Lib AA070E1X Aven... 28 4.8
gb|CN819392.1|CN819392 HRO4405_E01_I01ZS5 Lib AA069E1X Aven... 28 4.8
>gb|CN814790.1|CN814790 HRO4502_E06_I12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_E06_I12, mRNA sequence
Length = 727
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 agcacatctgctggc 32
|||||||||||||||
Sbjct: 547 agcacatctgctggc 533
>gb|CN815695.1|CN815695 HRO4514_E05_I10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_E05_I10, mRNA sequence
Length = 727
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 agcacatctgctggc 32
|||||||||||||||
Sbjct: 545 agcacatctgctggc 531
>gb|CN816322.1|CN816322 HRO4519_D09_H17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_D09_H17, mRNA sequence
Length = 354
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 tttcacatttctttc 93
|||||||||||||||
Sbjct: 320 tttcacatttctttc 334
>gb|CN819303.1|CN819303 HRO4452_D08_G16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_D08_G16, mRNA sequence
Length = 842
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 acaatgtcattggt 77
||||||||||||||
Sbjct: 611 acaatgtcattggt 624
>gb|CN819392.1|CN819392 HRO4405_E01_I01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_E01_I01, mRNA
sequence
Length = 717
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 ttatcacaatgtca 72
||||||||||||||
Sbjct: 117 ttatcacaatgtca 130
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 490
Number of Sequences: 8143
Number of extensions: 490
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 5
length of query: 352
length of database: 4,702,463
effective HSP length: 15
effective length of query: 337
effective length of database: 4,580,318
effective search space: 1543567166
effective search space used: 1543567166
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)