BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818402.1|CN818402 HRO4469_C12_F23ZS5 Lib AA070E1X Aven... 34 0.070
gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphospha... 34 0.070
gb|CN815143.1|CN815143 HRO4506_D01_G02ZS5 Lib AA071E1X Aven... 32 0.28
gb|CN818169.1|CN818169 HRO4471_B09_C17ZS5 Lib AA070E1X Aven... 32 0.28
gb|CN816315.1|CN816315 HRO4519_D02_H03ZS5 Lib AA071E1X Aven... 30 1.1
gb|CN818858.1|CN818858 HRO4473_F07_XXXZS5 Lib AA070E1X Aven... 30 1.1
gb|CN819097.1|CN819097 HRO4468_H12_O24ZS5 Lib AA070E1X Aven... 30 1.1
gb|CN819670.1|CN819670 HRO4402_G10_M20ZS5 Lib AA069E1X Aven... 30 1.1
gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Aven... 30 1.1
gb|CK780236.1|CK780236 umn13 UMN cDNA from oat Avena sativa... 28 4.3
gb|CN814836.1|CN814836 HRO4503_A05_B09ZS5 Lib AA071E1X Aven... 28 4.3
gb|CN815107.1|CN815107 HRO4505_H11_O21ZS5 Lib AA071E1X Aven... 28 4.3
gb|CN816189.1|CN816189 HRO4517_H11_O21ZS5 Lib AA071E1X Aven... 28 4.3
gb|CN816438.1|CN816438 HRO4520_G03_N06ZS5 Lib AA071E1X Aven... 28 4.3
gb|CN816652.1|CN816652 HRO4523_C04_F07ZS5 Lib AA071E1X Aven... 28 4.3
gb|CN817266.1|CN817266 HRO4464_F06_K12ZS5 Lib AA070E1X Aven... 28 4.3
gb|CN817702.1|CN817702 HRO4459_F09_K17ZS5 Lib AA070E1X Aven... 28 4.3
gb|CN818670.1|CN818670 HRO4467_F10_K19ZS5 Lib AA070E1X Aven... 28 4.3
gb|CN820146.1|CN820146 HRO4411_F10_L19ZS5 Lib AA069E1X Aven... 28 4.3
gb|CN820863.1|CN820863 HRO4420_G11_N22ZS5 Lib AA069E1X Aven... 28 4.3
gb|CN821183.1|CN821183 HRO4428_D10_H20ZS5 Lib AA069E1X Aven... 28 4.3
>gb|CN818402.1|CN818402 HRO4469_C12_F23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_C12_F23, mRNA sequence
Length = 423
Score = 34.2 bits (17), Expect = 0.070
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 140 aaataaaggcagtatactttc 160
||||||| |||||||||||||
Sbjct: 393 aaataaacgcagtatactttc 373
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA,
complete cds; nuclear gene for chloroplast product
Length = 1577
Score = 34.2 bits (17), Expect = 0.070
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 140 aaataaaggcagtatactttc 160
||||||| |||||||||||||
Sbjct: 1422 aaataaacgcagtatactttc 1402
>gb|CN815143.1|CN815143 HRO4506_D01_G02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4506_D01_G02, mRNA sequence
Length = 248
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 13 aaattgttgctcctgg 28
||||||||||||||||
Sbjct: 40 aaattgttgctcctgg 25
>gb|CN818169.1|CN818169 HRO4471_B09_C17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_B09_C17, mRNA sequence
Length = 725
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 13 aaattgttgctcctgg 28
||||||||||||||||
Sbjct: 510 aaattgttgctcctgg 525
>gb|CN816315.1|CN816315 HRO4519_D02_H03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_D02_H03, mRNA sequence
Length = 504
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 catatttttccattg 81
|||||||||||||||
Sbjct: 172 catatttttccattg 186
>gb|CN818858.1|CN818858 HRO4473_F07_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_F07_XXX, mRNA sequence
Length = 801
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 agcttcatttaatcc 229
|||||||||||||||
Sbjct: 220 agcttcatttaatcc 206
>gb|CN819097.1|CN819097 HRO4468_H12_O24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_H12_O24, mRNA sequence
Length = 808
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 caagattatttctgt 175
|||||||||||||||
Sbjct: 55 caagattatttctgt 41
>gb|CN819670.1|CN819670 HRO4402_G10_M20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G10_M20, mRNA
sequence
Length = 585
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 catatttttccattg 81
|||||||||||||||
Sbjct: 229 catatttttccattg 243
>gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_F03_L06, mRNA
sequence
Length = 577
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 tataaattggctcta 265
|||||||||||||||
Sbjct: 409 tataaattggctcta 395
>gb|CK780236.1|CK780236 umn13 UMN cDNA from oat Avena sativa cDNA clone JMT4_D05 5', mRNA
sequence
Length = 569
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 atcaccacagcaac 57
||||||||||||||
Sbjct: 216 atcaccacagcaac 229
>gb|CN814836.1|CN814836 HRO4503_A05_B09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A05_B09, mRNA sequence
Length = 808
Score = 28.2 bits (14), Expect = 4.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 23 tcctggtggatcatctca 40
|||||| |||||||||||
Sbjct: 279 tcctggaggatcatctca 296
>gb|CN815107.1|CN815107 HRO4505_H11_O21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_H11_O21, mRNA sequence
Length = 337
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 tcatatttttccat 79
||||||||||||||
Sbjct: 199 tcatatttttccat 186
>gb|CN816189.1|CN816189 HRO4517_H11_O21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_H11_O21, mRNA sequence
Length = 901
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 taacaccaaataaa 146
||||||||||||||
Sbjct: 118 taacaccaaataaa 105
>gb|CN816438.1|CN816438 HRO4520_G03_N06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_G03_N06, mRNA sequence
Length = 550
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 ttcatatttttcca 78
||||||||||||||
Sbjct: 508 ttcatatttttcca 521
>gb|CN816652.1|CN816652 HRO4523_C04_F07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_C04_F07, mRNA sequence
Length = 814
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 233 accatacttccgat 246
||||||||||||||
Sbjct: 343 accatacttccgat 330
>gb|CN817266.1|CN817266 HRO4464_F06_K12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_F06_K12, mRNA sequence
Length = 793
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 300 tctaattttcaggt 313
||||||||||||||
Sbjct: 775 tctaattttcaggt 788
>gb|CN817702.1|CN817702 HRO4459_F09_K17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_F09_K17, mRNA sequence
Length = 653
Score = 28.2 bits (14), Expect = 4.3
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 201 gctgaggaaaagaaagcttcat 222
||||||||||| ||||| ||||
Sbjct: 346 gctgaggaaaaaaaagcatcat 325
>gb|CN818670.1|CN818670 HRO4467_F10_K19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_F10_K19, mRNA sequence
Length = 409
Score = 28.2 bits (14), Expect = 4.3
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 201 gctgaggaaaagaaagcttcat 222
||||||||||| ||||| ||||
Sbjct: 122 gctgaggaaaaaaaagcatcat 101
>gb|CN820146.1|CN820146 HRO4411_F10_L19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_F10_L19, mRNA
sequence
Length = 789
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 actcttcagtggag 131
||||||||||||||
Sbjct: 443 actcttcagtggag 456
>gb|CN820863.1|CN820863 HRO4420_G11_N22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_G11_N22, mRNA
sequence
Length = 756
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 ttgattcatatgca 92
||||||||||||||
Sbjct: 173 ttgattcatatgca 186
>gb|CN821183.1|CN821183 HRO4428_D10_H20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_D10_H20, mRNA
sequence
Length = 448
Score = 28.2 bits (14), Expect = 4.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 cattcagaaagatg 201
||||||||||||||
Sbjct: 177 cattcagaaagatg 190
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1087
Number of Sequences: 8143
Number of extensions: 1087
Number of successful extensions: 275
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 24
length of query: 315
length of database: 4,702,463
effective HSP length: 15
effective length of query: 300
effective length of database: 4,580,318
effective search space: 1374095400
effective search space used: 1374095400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)