BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF11h01.xg.2.1
(328 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Aven... 42 3e-004
gb|CN815320.1|CN815320 HRO4508_D05_H10ZS5 Lib AA071E1X Aven... 32 0.29
gb|CN816711.1|CN816711 HRO4523_H06_P11ZS5 Lib AA071E1X Aven... 32 0.29
>gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D01_H01, mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 3e-004
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 30 gctgatgcttggattatagccaagacccattacatgccatgacttatccagtggctt 86
|||||||||||||||||| || ||||| | |||||||| || || ||||| |||||
Sbjct: 465 gctgatgcttggattatacccgagaccaagaacatgccaggatttgtccagaggctt 409
>gb|CN815320.1|CN815320 HRO4508_D05_H10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_D05_H10, mRNA sequence
Length = 412
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 279 gggctgcgtgaagttgagat 298
||||||||||||| ||||||
Sbjct: 195 gggctgcgtgaagatgagat 214
>gb|CN816711.1|CN816711 HRO4523_H06_P11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_H06_P11, mRNA sequence
Length = 708
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 279 gggctgcgtgaagttgagat 298
||||||||||||| ||||||
Sbjct: 286 gggctgcgtgaagatgagat 305
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 562
Number of Sequences: 8143
Number of extensions: 562
Number of successful extensions: 146
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 3
length of query: 328
length of database: 4,702,463
effective HSP length: 15
effective length of query: 313
effective length of database: 4,580,318
effective search space: 1433639534
effective search space used: 1433639534
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)