BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819954.1|CN819954 HRO4409_B01_C01ZS5 Lib AA069E1X Aven... 70 9e-012
gb|CN820541.1|CN820541 HRO4413_E10_I19ZS5 Lib AA069E1X Aven... 42 0.002
gb|CN815249.1|CN815249 HRO4507_E10_J19ZS5 Lib AA071E1X Aven... 34 0.49
gb|CN815371.1|CN815371 HRO4508_H10_P20ZS5 Lib AA071E1X Aven... 34 0.49
gb|CN816475.1|CN816475 HRO4521_B09_C17ZS5 Lib AA071E1X Aven... 34 0.49
>gb|CN819954.1|CN819954 HRO4409_B01_C01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_B01_C01, mRNA
sequence
Length = 542
Score = 69.9 bits (35), Expect = 9e-012
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1511 gaaaagaagaggaagctggagatgctagagaagcaatac 1549
||||||||||||||| |||||||||||||||||||||||
Sbjct: 12 gaaaagaagaggaagttggagatgctagagaagcaatac 50
>gb|CN820541.1|CN820541 HRO4413_E10_I19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_E10_I19, mRNA
sequence
Length = 787
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 462 gaggaggatgatgatgatgat 482
Score = 34.2 bits (17), Expect = 0.49
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
||||| |||||||||||||||
Sbjct: 465 gaggatgatgatgatgatgat 485
>gb|CN815249.1|CN815249 HRO4507_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_E10_J19, mRNA sequence
Length = 720
Score = 34.2 bits (17), Expect = 0.49
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||| ||||||
Sbjct: 524 gaggaggatgatgacgatgat 544
>gb|CN815371.1|CN815371 HRO4508_H10_P20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H10_P20, mRNA sequence
Length = 351
Score = 34.2 bits (17), Expect = 0.49
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||| ||||||
Sbjct: 81 gaggaggatgatgacgatgat 101
>gb|CN816475.1|CN816475 HRO4521_B09_C17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_B09_C17, mRNA sequence
Length = 857
Score = 34.2 bits (17), Expect = 0.49
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||| ||||||
Sbjct: 327 gaggaggatgatgacgatgat 307
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7116
Number of Sequences: 8143
Number of extensions: 7116
Number of successful extensions: 2157
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 18
length of query: 2118
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2101
effective length of database: 4,564,032
effective search space: 9589031232
effective search space used: 9589031232
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)