BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820947.1|CN820947 HRO4421_G08_M15ZS5 Lib AA069E1X Aven... 50 9e-006
>gb|CN820947.1|CN820947 HRO4421_G08_M15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G08_M15, mRNA
sequence
Length = 733
Score = 50.1 bits (25), Expect = 9e-006
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1834 gagaaggaggagctgctcaacgcagccgtccgccgcgtggacgcgctggaagc 1886
||||| || ||| |||| || |||||||||||||||||||| || ||||||||
Sbjct: 475 gagaaagaagagttgcttaatgcagccgtccgccgcgtggatgctctggaagc 527
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5744
Number of Sequences: 8143
Number of extensions: 5744
Number of successful extensions: 1637
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1635
Number of HSP's gapped (non-prelim): 2
length of query: 2357
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2340
effective length of database: 4,564,032
effective search space: 10679834880
effective search space used: 10679834880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)