BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAD12g05.sg.3.2
         (900 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815889.1|CN815889  HRO4511_F03_L05ZS5 Lib AA071E1X Aven...   222   4e-058
gb|CN815830.1|CN815830  HRO4510_H11_O22ZS5 Lib AA071E1X Aven...   204   1e-052
gb|CN817669.1|CN817669  HRO4453_H03_P05ZS5 Lib AA070E1X Aven...   147   2e-035
>gb|CN815889.1|CN815889 HRO4511_F03_L05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4511_F03_L05, mRNA sequence
          Length = 744

 Score =  222 bits (112), Expect = 4e-058
 Identities = 286/344 (83%)
 Strand = Plus / Minus

                                                                       
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
           |||||||||||||| |||||||| || |||||||||   ||| | | |||||||||||| 
Sbjct: 614 atcgaggggcccttcgtcttcaccccggatttcttctccaagaacagccccaatttcttc 555

                                                                       
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
           |||||| | ||||| ||||| || || || ||||| || || || || |||||||| || 
Sbjct: 554 gatgaactctggaaggagtacagcaaaggcgactccagatacgtcgccagggacaccgcc 495

                                                                       
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgtc 498
           || || || |||||||| ||||| ||||| |||||||||||||| || || ||||| |||
Sbjct: 494 accgtcaccgtcgaaggaatcacggctgtgttggaaggccctgcttccctgcttgcagtc 435

                                                                       
Query: 499 tacgctattgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggc 558
           || || |||||| |  |||| |||| |||||| || ||||||||| | || ||  |||| 
Sbjct: 434 tatgcgattgcagctgggaaatcctacagccatatcctccagttcactgtatgcttgggt 375

                                                                       
Query: 559 cagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgg 618
           ||||||||||||||| |||| |||||||||||||| |||||||| || ||||||||||||
Sbjct: 374 cagctctacggatgcttggtctacttcatcaccgcttacttggatgggttcaacttctgg 315

                                                       
Query: 619 gtcggcccgttctacttctgggcgtatttcattggcgcaaacag 662
           ||| | ||||||||||||||||| |||||||| |||||||||||
Sbjct: 314 gtcagtccgttctacttctgggcatatttcatcggcgcaaacag 271
>gb|CN815830.1|CN815830 HRO4510_H11_O22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4510_H11_O22, mRNA sequence
          Length = 677

 Score =  204 bits (103), Expect = 1e-052
 Identities = 250/299 (83%)
 Strand = Plus / Plus

                                                                       
Query: 366 ccccaatttctttgatgaagtttggaaagagtatagtaagggagactctaggtatgttgc 425
           |||||||||||| ||||  || ||||| ||||| || || || ||||| || || || ||
Sbjct: 2   ccccaatttcttcgatgtcgtctggaaggagtacagcaaaggcgactccagatacgtcgc 61

                                                                       
Query: 426 tagggacactgcaactgttacggtcgaagggatcaccgctgtattggaaggccctgcatc 485
            |||||||| || || || || |||||||| ||||| || || |||||||||||||| ||
Sbjct: 62  cagggacaccgccaccgtcaccgtcgaaggaatcacggccgtgttggaaggccctgcttc 121

                                                                       
Query: 486 actacttgctgtctacgctattgcatccaggaagtccttcagccacattctccagttcgc 545
            || ||||| ||||| || ||||||||  ||||||||| |||||| || ||||||||| |
Sbjct: 122 cctgcttgcagtctatgccattgcatctgggaagtcctacagccatatcctccagttcac 181

                                                                       
Query: 546 cgtctgtctgggccagctctacggatgcctggtttacttcatcaccgcgtacttggacgg 605
            || || || || ||||||||||||||| |||| |||||||||||||| |||||||| ||
Sbjct: 182 ggtgtgcctcggtcagctctacggatgcttggtatacttcatcaccgcctacttggatgg 241

                                                                      
Query: 606 cttcaacttctgggtcggcccgttctacttctgggcgtatttcattggcgcaaacagct 664
           |||||||||||||| | | ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 242 cttcaacttctgggccagtccgttctacttctgggcatatttcatcggcgcaaacagct 300
>gb|CN817669.1|CN817669 HRO4453_H03_P05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4453_H03_P05, mRNA sequence
          Length = 433

 Score =  147 bits (74), Expect = 2e-035
 Identities = 122/138 (88%)
 Strand = Plus / Plus

                                                                       
Query: 525 cagccacattctccagttcgccgtctgtctgggccagctctacggatgcctggtttactt 584
           |||||| || ||||||||| | || || ||||| ||||||||||||||| |||| |||||
Sbjct: 17  cagccatatcctccagttcactgtatgcctgggtcagctctacggatgcttggtctactt 76

                                                                       
Query: 585 catcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgta 644
           ||||||||| |||||||| |||||||||||||||||| | || |||||||||||||| ||
Sbjct: 77  catcaccgcctacttggatggcttcaacttctgggtcagtcctttctacttctgggcata 136

                             
Query: 645 tttcattggcgcaaacag 662
           |||||| |||||||||||
Sbjct: 137 tttcatcggcgcaaacag 154
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2377
Number of Sequences: 8143
Number of extensions: 2377
Number of successful extensions: 796
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 4
length of query: 900
length of database: 4,702,463
effective HSP length: 16
effective length of query: 884
effective length of database: 4,572,175
effective search space: 4041802700
effective search space used: 4041802700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)