BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815889.1|CN815889 HRO4511_F03_L05ZS5 Lib AA071E1X Aven... 222 4e-058
gb|CN815830.1|CN815830 HRO4510_H11_O22ZS5 Lib AA071E1X Aven... 204 1e-052
gb|CN817669.1|CN817669 HRO4453_H03_P05ZS5 Lib AA070E1X Aven... 147 2e-035
>gb|CN815889.1|CN815889 HRO4511_F03_L05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_F03_L05, mRNA sequence
Length = 744
Score = 222 bits (112), Expect = 4e-058
Identities = 286/344 (83%)
Strand = Plus / Minus
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| |||||||| || ||||||||| ||| | | ||||||||||||
Sbjct: 614 atcgaggggcccttcgtcttcaccccggatttcttctccaagaacagccccaatttcttc 555
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|||||| | ||||| ||||| || || || ||||| || || || || |||||||| ||
Sbjct: 554 gatgaactctggaaggagtacagcaaaggcgactccagatacgtcgccagggacaccgcc 495
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgtc 498
|| || || |||||||| ||||| ||||| |||||||||||||| || || ||||| |||
Sbjct: 494 accgtcaccgtcgaaggaatcacggctgtgttggaaggccctgcttccctgcttgcagtc 435
Query: 499 tacgctattgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggc 558
|| || |||||| | |||| |||| |||||| || ||||||||| | || || ||||
Sbjct: 434 tatgcgattgcagctgggaaatcctacagccatatcctccagttcactgtatgcttgggt 375
Query: 559 cagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgg 618
||||||||||||||| |||| |||||||||||||| |||||||| || ||||||||||||
Sbjct: 374 cagctctacggatgcttggtctacttcatcaccgcttacttggatgggttcaacttctgg 315
Query: 619 gtcggcccgttctacttctgggcgtatttcattggcgcaaacag 662
||| | ||||||||||||||||| |||||||| |||||||||||
Sbjct: 314 gtcagtccgttctacttctgggcatatttcatcggcgcaaacag 271
>gb|CN815830.1|CN815830 HRO4510_H11_O22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_H11_O22, mRNA sequence
Length = 677
Score = 204 bits (103), Expect = 1e-052
Identities = 250/299 (83%)
Strand = Plus / Plus
Query: 366 ccccaatttctttgatgaagtttggaaagagtatagtaagggagactctaggtatgttgc 425
|||||||||||| |||| || ||||| ||||| || || || ||||| || || || ||
Sbjct: 2 ccccaatttcttcgatgtcgtctggaaggagtacagcaaaggcgactccagatacgtcgc 61
Query: 426 tagggacactgcaactgttacggtcgaagggatcaccgctgtattggaaggccctgcatc 485
|||||||| || || || || |||||||| ||||| || || |||||||||||||| ||
Sbjct: 62 cagggacaccgccaccgtcaccgtcgaaggaatcacggccgtgttggaaggccctgcttc 121
Query: 486 actacttgctgtctacgctattgcatccaggaagtccttcagccacattctccagttcgc 545
|| ||||| ||||| || |||||||| ||||||||| |||||| || ||||||||| |
Sbjct: 122 cctgcttgcagtctatgccattgcatctgggaagtcctacagccatatcctccagttcac 181
Query: 546 cgtctgtctgggccagctctacggatgcctggtttacttcatcaccgcgtacttggacgg 605
|| || || || ||||||||||||||| |||| |||||||||||||| |||||||| ||
Sbjct: 182 ggtgtgcctcggtcagctctacggatgcttggtatacttcatcaccgcctacttggatgg 241
Query: 606 cttcaacttctgggtcggcccgttctacttctgggcgtatttcattggcgcaaacagct 664
|||||||||||||| | | ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 242 cttcaacttctgggccagtccgttctacttctgggcatatttcatcggcgcaaacagct 300
>gb|CN817669.1|CN817669 HRO4453_H03_P05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_H03_P05, mRNA sequence
Length = 433
Score = 147 bits (74), Expect = 2e-035
Identities = 122/138 (88%)
Strand = Plus / Plus
Query: 525 cagccacattctccagttcgccgtctgtctgggccagctctacggatgcctggtttactt 584
|||||| || ||||||||| | || || ||||| ||||||||||||||| |||| |||||
Sbjct: 17 cagccatatcctccagttcactgtatgcctgggtcagctctacggatgcttggtctactt 76
Query: 585 catcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttctgggcgta 644
||||||||| |||||||| |||||||||||||||||| | || |||||||||||||| ||
Sbjct: 77 catcaccgcctacttggatggcttcaacttctgggtcagtcctttctacttctgggcata 136
Query: 645 tttcattggcgcaaacag 662
|||||| |||||||||||
Sbjct: 137 tttcatcggcgcaaacag 154
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2377
Number of Sequences: 8143
Number of extensions: 2377
Number of successful extensions: 796
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 4
length of query: 900
length of database: 4,702,463
effective HSP length: 16
effective length of query: 884
effective length of database: 4,572,175
effective search space: 4041802700
effective search space used: 4041802700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)