BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD10d05.sg.3.3
(1563 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815423.1|CN815423 HRO4509_E05_I09ZS5 Lib AA071E1X Aven... 163 6e-040
>gb|CN815423.1|CN815423 HRO4509_E05_I09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_E05_I09, mRNA sequence
Length = 649
Score = 163 bits (82), Expect = 6e-040
Identities = 190/226 (84%)
Strand = Plus / Plus
Query: 933 gcaaggctagcaaccccttcgttaacttgaagaaggaatacaagggcatcttctggcagg 992
||||||| |||| ||| ||||| ||| | |||||||| ||||||||||||||||||||||
Sbjct: 12 gcaaggccagcatcccgttcgtgaacctcaagaaggagtacaagggcatcttctggcagg 71
Query: 993 aggacatcatccccttcttccagaacgtgaccatccccaaggactgcgacaccgtccaaa 1052
||||||||||||||||||||||| || || | ||||||||||||||||||| || |
Sbjct: 72 aggacatcatccccttcttccaggccgccacgctgaccaaggactgcgacaccgtgcaga 131
Query: 1053 agtgctacatctacctctctggacaagtgaaggagaagctgggcacgattgacccctact 1112
|||||||||| ||||| || || | ||||||||| |||| ||| ||||||||||
Sbjct: 132 agtgctacattgcgctctcgcaccaggtcagggagaagctcggcaagatcgacccctact 191
Query: 1113 ttgtcaagctcggtgacgccatggtcacctggatcgaggcctggga 1158
| | |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 192 tcgccaagctcgccgacgccatggtcacctggatcgaggcatggga 237
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4143
Number of Sequences: 8143
Number of extensions: 4143
Number of successful extensions: 1103
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 4
length of query: 1563
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1546
effective length of database: 4,564,032
effective search space: 7055993472
effective search space used: 7055993472
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)