BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= F5H
(1360 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|A47134.1| Sequence 9 from Patent WO9529246 76 9e-014
dbj|AB000707.1| Avena sativa gene for auxin-binding protein... 60 5e-009
gb|BE439294.1|BE439294 CDO506_WHE04G12R ITEC CDO Oat cDNA L... 36 0.079
gb|BE439292.1|BE439292 CDO58_WHE04F10R ITEC CDO Oat cDNA Li... 34 0.31
gb|CN815493.1|CN815493 HRO4512_C06_F12ZS5 Lib AA071E1X Aven... 34 0.31
gb|CN816303.1|CN816303 HRO4519_C02_F03ZS5 Lib AA071E1X Aven... 34 0.31
gb|CN814903.1|CN814903 HRO4503_G05_N09ZS5 Lib AA071E1X Aven... 32 1.2
gb|CN816773.1|CN816773 HRO4524_F03_L06ZS5 Lib AA071E1X Aven... 32 1.2
gb|CN817162.1|CN817162 HRO4528_H09_P18ZS5 Lib AA071E1X Aven... 32 1.2
gb|CN817375.1|CN817375 HRO4458_C02_F04ZS5 Lib AA070E1X Aven... 32 1.2
gb|CN819103.1|CN819103 HRO4457_D03_H05ZS5 Lib AA070E1X Aven... 32 1.2
gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Aven... 32 1.2
gb|CN821430.1|CN821430 HRO4425_C03_E05ZS5 Lib AA069E1X Aven... 32 1.2
gb|BE439291.1|BE439291 CDO56_WHE04F09R ITEC CDO Oat cDNA Li... 30 4.9
gb|CN815325.1|CN815325 HRO4508_D10_H20ZS5 Lib AA071E1X Aven... 30 4.9
gb|CN817006.1|CN817006 HRO4527_C01_F01ZS5 Lib AA071E1X Aven... 30 4.9
gb|CN817424.1|CN817424 HRO4465_G08_N15ZS5 Lib AA070E1X Aven... 30 4.9
gb|CN817559.1|CN817559 HRO4463_F12_K23ZS5 Lib AA070E1X Aven... 30 4.9
gb|CN817855.1|CN817855 HRO4462_E07_J14ZS5 Lib AA070E1X Aven... 30 4.9
gb|CN817883.1|CN817883 HRO4462_D10_H20ZS5 Lib AA070E1X Aven... 30 4.9
gb|CN818489.1|CN818489 HRO4460_C05_E10ZS5 Lib AA070E1X Aven... 30 4.9
gb|CN818830.1|CN818830 HRO4460_A10_A20ZS5 Lib AA070E1X Aven... 30 4.9
gb|CN819222.1|CN819222 HRO4451_E08_I15ZS5 Lib AA070E1X Aven... 30 4.9
gb|CN821171.1|CN821171 HRO4428_C08_F16ZS5 Lib AA069E1X Aven... 30 4.9
gb|AM071410.1|AM071410 AM071410 Avena sativa leaf 3 weeks o... 30 4.9
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 30 4.9
>emb|A47134.1| Sequence 9 from Patent WO9529246
Length = 1926
Score = 75.8 bits (38), Expect = 9e-014
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 14 gcggccgctctagaactagtggatcccccgggctgcaggaattc 57
||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 1902 gcggccgctctagaactagnggatcccccgggctgcagnaattc 1859
>dbj|AB000707.1| Avena sativa gene for auxin-binding protein, complete cds
Length = 801
Score = 60.0 bits (30), Expect = 5e-009
Identities = 37/38 (97%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 14 gcggccgctctagaactagtggat-cccccgggctgca 50
|||||||||||||||||||||||| |||||||||||||
Sbjct: 38 gcggccgctctagaactagtggatccccccgggctgca 1
>gb|BE439294.1|BE439294 CDO506_WHE04G12R ITEC CDO Oat cDNA Library Avena sativa cDNA
clone CDO506_WHE04G12, mRNA sequence
Length = 167
Score = 36.2 bits (18), Expect = 0.079
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 47 tgcaggaattcggcacga 64
||||||||||||||||||
Sbjct: 1 tgcaggaattcggcacga 18
>gb|BE439292.1|BE439292 CDO58_WHE04F10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO58_WHE04, mRNA sequence
Length = 220
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 48 gcaggaattcggcacga 64
|||||||||||||||||
Sbjct: 1 gcaggaattcggcacga 17
>gb|CN815493.1|CN815493 HRO4512_C06_F12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_C06_F12, mRNA sequence
Length = 543
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 392 gacgacgccgacgccga 408
|||||||||||||||||
Sbjct: 137 gacgacgccgacgccga 153
>gb|CN816303.1|CN816303 HRO4519_C02_F03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_C02_F03, mRNA sequence
Length = 661
Score = 34.2 bits (17), Expect = 0.31
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 187 cgacggcgaggaccaggagga 207
||||||||||||| |||||||
Sbjct: 104 cgacggcgaggacgaggagga 84
>gb|CN814903.1|CN814903 HRO4503_G05_N09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_G05_N09, mRNA sequence
Length = 382
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 466 cgccgccgccgcggacggtg 485
|||||||||||| |||||||
Sbjct: 220 cgccgccgccgccgacggtg 201
>gb|CN816773.1|CN816773 HRO4524_F03_L06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_F03_L06, mRNA sequence
Length = 785
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 718 catcaaggagacgctc 733
||||||||||||||||
Sbjct: 15 catcaaggagacgctc 30
>gb|CN817162.1|CN817162 HRO4528_H09_P18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_H09_P18, mRNA sequence
Length = 617
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 623 ctgcgccggctgcagc 638
||||||||||||||||
Sbjct: 342 ctgcgccggctgcagc 357
>gb|CN817375.1|CN817375 HRO4458_C02_F04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_C02_F04, mRNA sequence
Length = 344
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1324 tcaattttttttattc 1339
||||||||||||||||
Sbjct: 332 tcaattttttttattc 317
>gb|CN819103.1|CN819103 HRO4457_D03_H05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_D03_H05, mRNA sequence
Length = 344
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1324 tcaattttttttattc 1339
||||||||||||||||
Sbjct: 332 tcaattttttttattc 317
>gb|CN820983.1|CN820983 HRO4422_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_B10_C20, mRNA
sequence
Length = 726
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 991 ggcgctgggcctgtacgcgc 1010
|||||||| |||||||||||
Sbjct: 555 ggcgctggacctgtacgcgc 536
>gb|CN821430.1|CN821430 HRO4425_C03_E05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_C03_E05, mRNA
sequence
Length = 605
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 466 cgccgccgccgcggacggtg 485
|||||||||||| |||||||
Sbjct: 489 cgccgccgccgccgacggtg 470
>gb|BE439291.1|BE439291 CDO56_WHE04F09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO56_WHE04, mRNA sequence
Length = 190
Score = 30.2 bits (15), Expect = 4.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 aggaattcggcacga 64
|||||||||||||||
Sbjct: 1 aggaattcggcacga 15
>gb|CN815325.1|CN815325 HRO4508_D10_H20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_D10_H20, mRNA sequence
Length = 676
Score = 30.2 bits (15), Expect = 4.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 347 atcgacaagatcatc 361
|||||||||||||||
Sbjct: 498 atcgacaagatcatc 512
>gb|CN817006.1|CN817006 HRO4527_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_C01_F01, mRNA sequence
Length = 558
Score = 30.2 bits (15), Expect = 4.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 443 gccaagccgcccaagaagg 461
|||||| ||||||||||||
Sbjct: 277 gccaagtcgcccaagaagg 295
>gb|CN817424.1|CN817424 HRO4465_G08_N15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4465_G08_N15, mRNA
sequence
Length = 228
Score = 30.2 bits (15), Expect = 4.9
Identities = 22/23 (95%), Gaps = 1/23 (4%)
Strand = Plus / Plus
Query: 42 cgggctgcaggaattcggcacga 64
||||||||||| |||||||||||
Sbjct: 1 cgggctgcagg-attcggcacga 22
>gb|CN817559.1|CN817559 HRO4463_F12_K23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_F12_K23, mRNA sequence
Length = 761
Score = 30.2 bits (15), Expect = 4.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1317 gccattatcaatttttttt 1335
|||||| ||||||||||||
Sbjct: 661 gccattgtcaatttttttt 679
>gb|CN817855.1|CN817855 HRO4462_E07_J14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_E07_J14, mRNA sequence
Length = 484
Score = 30.2 bits (15), Expect = 4.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1317 gccattatcaatttttttt 1335
|||||| ||||||||||||
Sbjct: 389 gccattgtcaatttttttt 407
>gb|CN817883.1|CN817883 HRO4462_D10_H20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_D10_H20, mRNA sequence
Length = 629
Score = 30.2 bits (15), Expect = 4.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 tcgtcgacttcctgc 272
|||||||||||||||
Sbjct: 312 tcgtcgacttcctgc 298
>gb|CN818489.1|CN818489 HRO4460_C05_E10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_C05_E10, mRNA sequence
Length = 641
Score = 30.2 bits (15), Expect = 4.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 833 gtgtgggccatcggc 847
|||||||||||||||
Sbjct: 127 gtgtgggccatcggc 141
>gb|CN818830.1|CN818830 HRO4460_A10_A20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_A10_A20, mRNA sequence
Length = 561
Score = 30.2 bits (15), Expect = 4.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1317 gccattatcaatttttttt 1335
|||||| ||||||||||||
Sbjct: 458 gccattgtcaatttttttt 476
>gb|CN819222.1|CN819222 HRO4451_E08_I15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_E08_I15, mRNA sequence
Length = 450
Score = 30.2 bits (15), Expect = 4.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1317 gccattatcaatttttttt 1335
|||||| ||||||||||||
Sbjct: 369 gccattgtcaatttttttt 387
>gb|CN821171.1|CN821171 HRO4428_C08_F16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_C08_F16, mRNA
sequence
Length = 340
Score = 30.2 bits (15), Expect = 4.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 715 cgtcatcaaggagac 729
|||||||||||||||
Sbjct: 126 cgtcatcaaggagac 140
>gb|AM071410.1|AM071410 AM071410 Avena sativa leaf 3 weeks old, post-germination Avena
sativa cDNA clone ASCID1-1_037_g11, mRNA sequence
Length = 748
Score = 30.2 bits (15), Expect = 4.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 567 cggtggcgtcggcga 581
|||||||||||||||
Sbjct: 611 cggtggcgtcggcga 597
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 30.2 bits (15), Expect = 4.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 14 gcggccgctctagaa 28
|||||||||||||||
Sbjct: 3421 gcggccgctctagaa 3407
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3279
Number of Sequences: 8143
Number of extensions: 3279
Number of successful extensions: 991
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 38
length of query: 1360
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1344
effective length of database: 4,572,175
effective search space: 6145003200
effective search space used: 6145003200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)