BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CCR2
(1466 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Aven... 58 2e-008
gb|AA231884.1|AA231884 CDO475.R cDNA from oat Avena sativa ... 36 0.085
gb|CN817534.1|CN817534 HRO4463_H03_O05ZS5 Lib AA070E1X Aven... 34 0.34
gb|CN817776.1|CN817776 HRO4459_A11_A21ZS5 Lib AA070E1X Aven... 34 0.34
gb|CN817882.1|CN817882 HRO4462_D09_H18ZS5 Lib AA070E1X Aven... 34 0.34
gb|CN818506.1|CN818506 HRO4466_E07_J14ZS5 Lib AA070E1X Aven... 34 0.34
gb|CN818629.1|CN818629 HRO4467_D03_G05ZS5 Lib AA070E1X Aven... 34 0.34
gb|CN814978.1|CN814978 HRO4504_E08_J16ZS5 Lib AA071E1X Aven... 32 1.3
gb|CN815387.1|CN815387 HRO4509_B02_C03ZS5 Lib AA071E1X Aven... 32 1.3
gb|CN819185.1|CN819185 HRO4451_B05_C09ZS5 Lib AA070E1X Aven... 32 1.3
gb|CN819236.1|CN819236 HRO4451_F10_K19ZS5 Lib AA070E1X Aven... 32 1.3
gb|CN819275.1|CN819275 HRO4452_B03_C06ZS5 Lib AA070E1X Aven... 32 1.3
gb|CN819277.1|CN819277 HRO4452_B05_C10ZS5 Lib AA070E1X Aven... 32 1.3
gb|CN821038.1|CN821038 HRO4422_H01_O02ZS5 Lib AA069E1X Aven... 32 1.3
gb|CN815331.1|CN815331 HRO4508_E04_J08ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN815936.1|CN815936 HRO4515_B03_D05ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN816337.1|CN816337 HRO4519_F01_L01ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN816627.1|CN816627 HRO4523_A03_B05ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN816703.1|CN816703 HRO4523_G08_N15ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN816761.1|CN816761 HRO4524_E02_J04ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN818095.1|CN818095 HRO4471_H02_O03ZS5 Lib AA070E1X Aven... 30 5.3
gb|CN819179.1|CN819179 HRO4451_A11_A21ZS5 Lib AA070E1X Aven... 30 5.3
gb|CN820638.1|CN820638 HRO4415_G01_N01ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN821627.1|CN821627 HRO4408_D09_H18ZS5 Lib AA069E1X Aven... 30 5.3
dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthran... 30 5.3
dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthran... 30 5.3
>gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_A06_B11, mRNA sequence
Length = 741
Score = 58.0 bits (29), Expect = 2e-008
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 926 ccgcgtcctcgccaagctcttcccggagtaccccgtacccaccaagtgc 974
|||| ||||| ||||||||||||| ||||||||||| ||||||| ||||
Sbjct: 610 ccgcatcctctccaagctcttccccgagtaccccgtccccaccaggtgc 658
>gb|AA231884.1|AA231884 CDO475.R cDNA from oat Avena sativa cDNA clone CDO475, mRNA
sequence
Length = 274
Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 327 ctcgtcctcctccgcgcc 344
||||||||||||||||||
Sbjct: 2 ctcgtcctcctccgcgcc 19
>gb|CN817534.1|CN817534 HRO4463_H03_O05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_H03_O05, mRNA sequence
Length = 626
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1369 acatgcatgcaatgtat 1385
|||||||||||||||||
Sbjct: 489 acatgcatgcaatgtat 473
>gb|CN817776.1|CN817776 HRO4459_A11_A21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_A11_A21, mRNA sequence
Length = 170
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1369 acatgcatgcaatgtat 1385
|||||||||||||||||
Sbjct: 105 acatgcatgcaatgtat 89
>gb|CN817882.1|CN817882 HRO4462_D09_H18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_D09_H18, mRNA sequence
Length = 765
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1120 gacaaaacaagaccatg 1136
|||||||||||||||||
Sbjct: 292 gacaaaacaagaccatg 276
>gb|CN818506.1|CN818506 HRO4466_E07_J14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_E07_J14, mRNA sequence
Length = 417
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1369 acatgcatgcaatgtat 1385
|||||||||||||||||
Sbjct: 330 acatgcatgcaatgtat 314
>gb|CN818629.1|CN818629 HRO4467_D03_G05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_D03_G05, mRNA sequence
Length = 477
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1369 acatgcatgcaatgtat 1385
|||||||||||||||||
Sbjct: 378 acatgcatgcaatgtat 362
>gb|CN814978.1|CN814978 HRO4504_E08_J16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_E08_J16, mRNA sequence
Length = 637
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 144 gtgccgccggagctgt 159
||||||||||||||||
Sbjct: 101 gtgccgccggagctgt 86
>gb|CN815387.1|CN815387 HRO4509_B02_C03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_B02_C03, mRNA sequence
Length = 527
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 705 ccggtgctggtgctgg 720
||||||||||||||||
Sbjct: 206 ccggtgctggtgctgg 221
>gb|CN819185.1|CN819185 HRO4451_B05_C09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_B05_C09, mRNA sequence
Length = 779
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 144 gtgccgccggagctgt 159
||||||||||||||||
Sbjct: 270 gtgccgccggagctgt 255
>gb|CN819236.1|CN819236 HRO4451_F10_K19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_F10_K19, mRNA sequence
Length = 703
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 705 ccggtgctggtgctgg 720
||||||||||||||||
Sbjct: 177 ccggtgctggtgctgg 192
>gb|CN819275.1|CN819275 HRO4452_B03_C06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_B03_C06, mRNA sequence
Length = 527
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 144 gtgccgccggagctgt 159
||||||||||||||||
Sbjct: 36 gtgccgccggagctgt 21
>gb|CN819277.1|CN819277 HRO4452_B05_C10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_B05_C10, mRNA sequence
Length = 448
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 144 gtgccgccggagctgt 159
||||||||||||||||
Sbjct: 267 gtgccgccggagctgt 252
>gb|CN821038.1|CN821038 HRO4422_H01_O02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H01_O02, mRNA
sequence
Length = 519
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1081 caccagcctccaggag 1096
||||||||||||||||
Sbjct: 49 caccagcctccaggag 34
>gb|CN815331.1|CN815331 HRO4508_E04_J08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_E04_J08, mRNA sequence
Length = 552
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 443 cgagccagcgatccg 457
|||||||||||||||
Sbjct: 551 cgagccagcgatccg 537
>gb|CN815936.1|CN815936 HRO4515_B03_D05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_B03_D05, mRNA sequence
Length = 798
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 476 ggcggcggcggacga 490
|||||||||||||||
Sbjct: 35 ggcggcggcggacga 21
>gb|CN816337.1|CN816337 HRO4519_F01_L01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_F01_L01, mRNA sequence
Length = 554
Score = 30.2 bits (15), Expect = 5.3
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 557 ccccagcaagcctgtggacgaca 579
||||||||| | |||||||||||
Sbjct: 50 ccccagcaatcgtgtggacgaca 72
>gb|CN816627.1|CN816627 HRO4523_A03_B05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_A03_B05, mRNA sequence
Length = 331
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1157 tcatattcatatcct 1171
|||||||||||||||
Sbjct: 156 tcatattcatatcct 142
>gb|CN816703.1|CN816703 HRO4523_G08_N15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_G08_N15, mRNA sequence
Length = 729
Score = 30.2 bits (15), Expect = 5.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 917 cgacctctgccgcgtcctc 935
||||||||||| |||||||
Sbjct: 145 cgacctctgcctcgtcctc 127
>gb|CN816761.1|CN816761 HRO4524_E02_J04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_E02_J04, mRNA sequence
Length = 530
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 553 gtgaccccagcaagc 567
|||||||||||||||
Sbjct: 100 gtgaccccagcaagc 114
>gb|CN818095.1|CN818095 HRO4471_H02_O03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_H02_O03, mRNA sequence
Length = 401
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 775 tgacggggtcggcca 789
|||||||||||||||
Sbjct: 120 tgacggggtcggcca 106
>gb|CN819179.1|CN819179 HRO4451_A11_A21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_A11_A21, mRNA sequence
Length = 891
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1334 tgcatctgcatgcat 1348
|||||||||||||||
Sbjct: 874 tgcatctgcatgcat 888
>gb|CN820638.1|CN820638 HRO4415_G01_N01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G01_N01, mRNA
sequence
Length = 361
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 777 acggggtcggccacg 791
|||||||||||||||
Sbjct: 136 acggggtcggccacg 150
>gb|CN821627.1|CN821627 HRO4408_D09_H18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D09_H18, mRNA
sequence
Length = 657
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1019 ccagaggctcaagga 1033
|||||||||||||||
Sbjct: 346 ccagaggctcaagga 360
>dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 1, complete cds
Length = 1755
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 309 gacggcgccgtcgac 323
|||||||||||||||
Sbjct: 440 gacggcgccgtcgac 454
>dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthranilate
hydroxycinnamoyltransferase 3, complete cds
Length = 1659
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 309 gacggcgccgtcgac 323
|||||||||||||||
Sbjct: 313 gacggcgccgtcgac 327
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2912
Number of Sequences: 8143
Number of extensions: 2912
Number of successful extensions: 956
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 32
length of query: 1466
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1449
effective length of database: 4,564,032
effective search space: 6613282368
effective search space used: 6613282368
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)