BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= C4H2
(1794 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ548077.1|BQ548077 CDO785-5 CDO Avena sativa cDNA clone... 34 0.41
gb|AA231868.1|AA231868 CDO783.F cDNA from oat Avena sativa ... 32 1.6
gb|BE439158.1|BE439158 CDO783_WHE03D08F ITEC CDO Oat cDNA L... 32 1.6
gb|CN814975.1|CN814975 HRO4504_E05_J10ZS5 Lib AA071E1X Aven... 32 1.6
gb|CN815910.1|CN815910 HRO4511_G12_N23ZS5 Lib AA071E1X Aven... 32 1.6
gb|CN816229.1|CN816229 HRO4518_D05_G10ZS5 Lib AA071E1X Aven... 32 1.6
gb|CN819917.1|CN819917 HRO4407_G11_N21ZS5 Lib AA069E1X Aven... 32 1.6
gb|CN820607.1|CN820607 HRO4415_D05_H09ZS5 Lib AA069E1X Aven... 32 1.6
gb|BE439121.1|BE439121 CDO482_WHE2G0062F ITEC CDO Oat cDNA ... 30 6.4
gb|CN814727.1|CN814727 HRO4501_H01_O01ZS5 Lib AA071E1X Aven... 30 6.4
gb|CN814779.1|CN814779 HRO4502_D07_G14ZS5 Lib AA071E1X Aven... 30 6.4
gb|CN815380.1|CN815380 HRO4509_A07_A13ZS5 Lib AA071E1X Aven... 30 6.4
gb|CN815423.1|CN815423 HRO4509_E05_I09ZS5 Lib AA071E1X Aven... 30 6.4
gb|CN816318.1|CN816318 HRO4519_D05_H09ZS5 Lib AA071E1X Aven... 30 6.4
gb|CN816368.1|CN816368 HRO4519_H09_P17ZS5 Lib AA071E1X Aven... 30 6.4
gb|CN816861.1|CN816861 HRO4525_F05_K09ZS5 Lib AA071E1X Aven... 30 6.4
gb|CN817175.1|CN817175 HRO4459_H10_O19ZS5 Lib AA070E1X Aven... 30 6.4
gb|CN817719.1|CN817719 HRO4453_G07_N13ZS5 Lib AA070E1X Aven... 30 6.4
gb|CN817863.1|CN817863 HRO4453_E05_J09ZS5 Lib AA070E1X Aven... 30 6.4
gb|CN818675.1|CN818675 HRO4467_F11_K21ZS5 Lib AA070E1X Aven... 30 6.4
gb|CN818763.1|CN818763 HRO4468_D01_G02ZS5 Lib AA070E1X Aven... 30 6.4
gb|CN819579.1|CN819579 HRO4401_G09_M17ZS5 Lib AA069E1X Aven... 30 6.4
gb|CN820162.1|CN820162 HRO4411_H04_P07ZS5 Lib AA069E1X Aven... 30 6.4
gb|CN820215.1|CN820215 HRO4412_F09_L18ZS5 Lib AA069E1X Aven... 30 6.4
gb|CN820391.1|CN820391 HRO4418_G11_M22ZS5 Lib AA069E1X Aven... 30 6.4
gb|CN820698.1|CN820698 HRO4416_E04_J08ZS5 Lib AA069E1X Aven... 30 6.4
gb|CN821184.1|CN821184 HRO4428_D11_H22ZS5 Lib AA069E1X Aven... 30 6.4
emb|AX113695.1| Sequence 4 from Patent WO0127296 30 6.4
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 30 6.4
emb|AM071409.1| Avena sativa partial mRNA for CBF-like tran... 30 6.4
>gb|BQ548077.1|BQ548077 CDO785-5 CDO Avena sativa cDNA clone CDO785 5', mRNA sequence
Length = 329
Score = 34.2 bits (17), Expect = 0.41
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1351 ggagaagcacgtcgagg 1367
|||||||||||||||||
Sbjct: 308 ggagaagcacgtcgagg 292
>gb|AA231868.1|AA231868 CDO783.F cDNA from oat Avena sativa cDNA clone CDO783, mRNA sequence
Length = 338
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1352 gagaagcacgtcgagg 1367
||||||||||||||||
Sbjct: 306 gagaagcacgtcgagg 291
>gb|BE439158.1|BE439158 CDO783_WHE03D08F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO783_WHE03D08, mRNA sequence
Length = 336
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1352 gagaagcacgtcgagg 1367
||||||||||||||||
Sbjct: 306 gagaagcacgtcgagg 291
>gb|CN814975.1|CN814975 HRO4504_E05_J10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_E05_J10, mRNA sequence
Length = 740
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 522 acggctgggaggccga 537
||||||||||||||||
Sbjct: 501 acggctgggaggccga 516
>gb|CN815910.1|CN815910 HRO4511_G12_N23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_G12_N23, mRNA sequence
Length = 429
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 529 ggaggccgaggccgcc 544
||||||||||||||||
Sbjct: 111 ggaggccgaggccgcc 126
>gb|CN816229.1|CN816229 HRO4518_D05_G10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_D05_G10, mRNA sequence
Length = 299
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 781 cctccgcggctacctc 796
||||||||||||||||
Sbjct: 35 cctccgcggctacctc 20
>gb|CN819917.1|CN819917 HRO4407_G11_N21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_G11_N21, mRNA
sequence
Length = 512
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1352 gagaagcacgtcgagg 1367
||||||||||||||||
Sbjct: 195 gagaagcacgtcgagg 210
>gb|CN820607.1|CN820607 HRO4415_D05_H09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_D05_H09, mRNA
sequence
Length = 671
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1352 gagaagcacgtcgagg 1367
||||||||||||||||
Sbjct: 359 gagaagcacgtcgagg 374
>gb|BE439121.1|BE439121 CDO482_WHE2G0062F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO482_WHE2G0062, mRNA sequence
Length = 413
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 gtcgccatcgcggtg 148
|||||||||||||||
Sbjct: 397 gtcgccatcgcggtg 383
>gb|CN814727.1|CN814727 HRO4501_H01_O01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_H01_O01, mRNA sequence
Length = 506
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1045 ggtgaaccacccgga 1059
|||||||||||||||
Sbjct: 263 ggtgaaccacccgga 249
>gb|CN814779.1|CN814779 HRO4502_D07_G14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_D07_G14, mRNA sequence
Length = 816
Score = 30.2 bits (15), Expect = 6.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 556 cgacgtgcgcctcgacccc 574
|||||||||||| ||||||
Sbjct: 263 cgacgtgcgccttgacccc 245
>gb|CN815380.1|CN815380 HRO4509_A07_A13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_A07_A13, mRNA sequence
Length = 830
Score = 30.2 bits (15), Expect = 6.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 800 gtctgcaaggaggtcaagg 818
|||||||||||| ||||||
Sbjct: 167 gtctgcaaggagatcaagg 185
>gb|CN815423.1|CN815423 HRO4509_E05_I09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_E05_I09, mRNA sequence
Length = 649
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1363 cgaggccaacggcaa 1377
|||||||||||||||
Sbjct: 262 cgaggccaacggcaa 276
>gb|CN816318.1|CN816318 HRO4519_D05_H09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_D05_H09, mRNA sequence
Length = 493
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 960 acaacgtgctcttca 974
|||||||||||||||
Sbjct: 98 acaacgtgctcttca 112
>gb|CN816368.1|CN816368 HRO4519_H09_P17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_H09_P17, mRNA sequence
Length = 335
Score = 30.2 bits (15), Expect = 6.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1736 caacaaagggaagggaagc 1754
|||| ||||||||||||||
Sbjct: 63 caacgaagggaagggaagc 81
>gb|CN816861.1|CN816861 HRO4525_F05_K09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_F05_K09, mRNA sequence
Length = 539
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 ggagaagctcctggt 111
|||||||||||||||
Sbjct: 9 ggagaagctcctggt 23
>gb|CN817175.1|CN817175 HRO4459_H10_O19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_H10_O19, mRNA sequence
Length = 389
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 688 cctccgcctcagggc 702
|||||||||||||||
Sbjct: 32 cctccgcctcagggc 46
>gb|CN817719.1|CN817719 HRO4453_G07_N13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_G07_N13, mRNA sequence
Length = 403
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 688 cctccgcctcagggc 702
|||||||||||||||
Sbjct: 55 cctccgcctcagggc 69
>gb|CN817863.1|CN817863 HRO4453_E05_J09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_E05_J09, mRNA sequence
Length = 371
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 688 cctccgcctcagggc 702
|||||||||||||||
Sbjct: 29 cctccgcctcagggc 43
>gb|CN818675.1|CN818675 HRO4467_F11_K21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_F11_K21, mRNA sequence
Length = 452
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 688 cctccgcctcagggc 702
|||||||||||||||
Sbjct: 122 cctccgcctcagggc 136
>gb|CN818763.1|CN818763 HRO4468_D01_G02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_D01_G02, mRNA sequence
Length = 663
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 tcggcgacgacctca 239
|||||||||||||||
Sbjct: 51 tcggcgacgacctca 65
>gb|CN819579.1|CN819579 HRO4401_G09_M17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_G09_M17, mRNA
sequence
Length = 806
Score = 30.2 bits (15), Expect = 6.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1489 gctgccgccgcccgggcag 1507
||||||||||||| |||||
Sbjct: 520 gctgccgccgccccggcag 538
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 537 aggccgccgccgtcg 551
|||||||||||||||
Sbjct: 167 aggccgccgccgtcg 181
>gb|CN820162.1|CN820162 HRO4411_H04_P07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_H04_P07, mRNA
sequence
Length = 457
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 612 tgcagctcatgatgt 626
|||||||||||||||
Sbjct: 36 tgcagctcatgatgt 50
>gb|CN820215.1|CN820215 HRO4412_F09_L18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_F09_L18, mRNA
sequence
Length = 417
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 688 cctccgcctcagggc 702
|||||||||||||||
Sbjct: 343 cctccgcctcagggc 329
>gb|CN820391.1|CN820391 HRO4418_G11_M22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_G11_M22, mRNA
sequence
Length = 498
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 688 cctccgcctcagggc 702
|||||||||||||||
Sbjct: 138 cctccgcctcagggc 152
>gb|CN820698.1|CN820698 HRO4416_E04_J08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_E04_J08, mRNA
sequence
Length = 690
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 755 gacttcatccccatc 769
|||||||||||||||
Sbjct: 418 gacttcatccccatc 404
>gb|CN821184.1|CN821184 HRO4428_D11_H22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_D11_H22, mRNA
sequence
Length = 851
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1040 gagctggtgaaccac 1054
|||||||||||||||
Sbjct: 567 gagctggtgaaccac 553
>emb|AX113695.1| Sequence 4 from Patent WO0127296
Length = 1469
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 951 tcaacgaggacaacg 965
|||||||||||||||
Sbjct: 948 tcaacgaggacaacg 962
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete
sequence
Length = 16091
Score = 30.2 bits (15), Expect = 6.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 69 gccccgtcgccatggtccttctc 91
|||||| |||| |||||||||||
Sbjct: 717 gccccgccgccctggtccttctc 739
>emb|AM071409.1| Avena sativa partial mRNA for CBF-like transcription factor (cbf4
gene)
Length = 848
Score = 30.2 bits (15), Expect = 6.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 532 ggccgaggccgccgc 546
|||||||||||||||
Sbjct: 320 ggccgaggccgccgc 334
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4304
Number of Sequences: 8143
Number of extensions: 4304
Number of successful extensions: 1222
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 39
length of query: 1794
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1777
effective length of database: 4,564,032
effective search space: 8110284864
effective search space used: 8110284864
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)