BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9009927.2.1
(404 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 58 6e-009
gb|CN816641.1|CN816641 HRO4523_B05_D09ZS5 Lib AA071E1X Aven... 34 0.090
gb|CN820193.1|CN820193 HRO4412_C06_F12ZS5 Lib AA069E1X Aven... 34 0.090
gb|CN814885.1|CN814885 HRO4503_E09_J17ZS5 Lib AA071E1X Aven... 32 0.36
gb|CN821555.1|CN821555 HRO4426_F07_K14ZS5 Lib AA069E1X Aven... 32 0.36
gb|AF237527.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237528.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237529.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237530.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237531.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237541.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237542.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237545.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237547.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237513.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237518.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF237519.1| Avena sativa receptor-like kinase extracellu... 32 0.36
gb|AF306739.1| Avena longiglumis receptor-like kinase extra... 32 0.36
gb|AF306746.1| Avena clauda receptor-like kinase extracellu... 32 0.36
gb|AF306747.1| Avena agadiriana receptor-like kinase extrac... 32 0.36
gb|AF306748.1| Avena clauda receptor-like kinase extracellu... 32 0.36
gb|AF306749.1| Avena clauda receptor-like kinase extracellu... 32 0.36
gb|AF306754.1| Avena byzantina receptor-like kinase extrace... 32 0.36
gb|AF306755.1| Avena byzantina receptor-like kinase extrace... 32 0.36
gb|AF306757.1| Avena sterilis receptor-like kinase extracel... 32 0.36
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 58.0 bits (29), Expect = 6e-009
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 46 aacacgggcctcatgcgctgcagcaagagctgccgcctccgctgg 90
|||||||| ||| | |||||| |||||||||||||||||||||||
Sbjct: 476 aacacggggctcttccgctgcggcaagagctgccgcctccgctgg 520
>gb|CN816641.1|CN816641 HRO4523_B05_D09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_B05_D09, mRNA sequence
Length = 493
Score = 34.2 bits (17), Expect = 0.090
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 257 caagaagaagctcaaga 273
|||||||||||||||||
Sbjct: 250 caagaagaagctcaaga 266
>gb|CN820193.1|CN820193 HRO4412_C06_F12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_C06_F12, mRNA
sequence
Length = 494
Score = 34.2 bits (17), Expect = 0.090
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 257 caagaagaagctcaaga 273
|||||||||||||||||
Sbjct: 211 caagaagaagctcaaga 227
>gb|CN814885.1|CN814885 HRO4503_E09_J17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E09_J17, mRNA sequence
Length = 490
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 tgctcggcaacaggtg 187
||||||||||||||||
Sbjct: 107 tgctcggcaacaggtg 122
>gb|CN821555.1|CN821555 HRO4426_F07_K14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_F07_K14, mRNA
sequence
Length = 513
Score = 32.2 bits (16), Expect = 0.36
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 310 actcctcctcgtcctcctcc 329
||||||| ||||||||||||
Sbjct: 317 actcctcgtcgtcctcctcc 298
>gb|AF237527.1| Avena sativa receptor-like kinase extracellular domain precursor
RLK4A1 (rlk4a1) gene, partial cds
Length = 835
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237528.1| Avena sativa receptor-like kinase extracellular domain precursor
RLK4A2 (rlk4a2) gene, partial cds
Length = 835
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237529.1| Avena sativa receptor-like kinase extracellular domain precursor
RLK4A3 (rlk4a3) gene, partial cds
Length = 835
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237530.1| Avena sativa receptor-like kinase extracellular domain precursor
RLK4A4 (rlk4a4) gene, partial cds
Length = 835
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237531.1| Avena sativa receptor-like kinase extracellular domain precursor
RLK4A5 (rlk4a5) gene, partial cds
Length = 835
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237541.1| Avena sativa receptor-like kinase extracellular domain rlk6a3
pseudogene, complete sequence
Length = 821
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237542.1| Avena sativa receptor-like kinase extracellular domain precursor
RLK6A4 (rlk6a4) gene, partial cds
Length = 835
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237545.1| Avena sativa receptor-like kinase extracellular domain rlk9a1
pseudogene, complete sequence
Length = 834
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237547.1| Avena sativa receptor-like kinase extracellular domain 9a3
pseudogene, complete sequence
Length = 833
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237513.1| Avena sativa receptor-like kinase extracellular domain rlk2a7
pseudogene, complete sequence
Length = 824
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 355 ctcaagaagaagctca 370
>gb|AF237518.1| Avena sativa receptor-like kinase extracellular domain rlk2a12
pseudogene, complete sequence
Length = 825
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 345 ctcaagaagaagctca 360
>gb|AF237519.1| Avena sativa receptor-like kinase extracellular domain rlk2a13
pseudogene, complete sequence
Length = 1581
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 1102 ctcaagaagaagctca 1117
>gb|AF306739.1| Avena longiglumis receptor-like kinase extracellular domain LRKA3A4
(lrka3a4) gene, partial cds
Length = 841
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 361 ctcaagaagaagctca 376
>gb|AF306746.1| Avena clauda receptor-like kinase extracellular domain lrka9a4
pseudogene, partial sequence
Length = 840
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 361 ctcaagaagaagctca 376
>gb|AF306747.1| Avena agadiriana receptor-like kinase extracellular domain LRKA11A3
(lrka11a3) gene, partial cds
Length = 841
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 361 ctcaagaagaagctca 376
>gb|AF306748.1| Avena clauda receptor-like kinase extracellular domain lrka11a4
pseudogene, partial sequence
Length = 839
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 360 ctcaagaagaagctca 375
>gb|AF306749.1| Avena clauda receptor-like kinase extracellular domain lrka11a5
pseudogene, partial sequence
Length = 841
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 361 ctcaagaagaagctca 376
>gb|AF306754.1| Avena byzantina receptor-like kinase extracellular domain LRKA14A3
(lrka14a3) gene, partial cds
Length = 841
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 361 ctcaagaagaagctca 376
>gb|AF306755.1| Avena byzantina receptor-like kinase extracellular domain LRKA14A5
(lrka14a5) gene, partial cds
Length = 841
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 361 ctcaagaagaagctca 376
>gb|AF306757.1| Avena sterilis receptor-like kinase extracellular domain LRKA15A5
(lrka15a5) gene, partial cds
Length = 841
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 255 ctcaagaagaagctca 270
||||||||||||||||
Sbjct: 361 ctcaagaagaagctca 376
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1203
Number of Sequences: 8143
Number of extensions: 1203
Number of successful extensions: 286
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 25
length of query: 404
length of database: 4,702,463
effective HSP length: 16
effective length of query: 388
effective length of database: 4,572,175
effective search space: 1774003900
effective search space used: 1774003900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)