BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 8635788.2.1
         (753 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814774.1|CN814774  HRO4502_D02_G04ZS5 Lib AA071E1X Aven...    36   0.043
gb|BE439314.1|BE439314  CDO1015_WHE05E08F ITEC CDO Oat cDNA ...    34   0.17 
gb|BE439347.1|BE439347  CDO1015_WHE05E08R ITEC CDO Oat cDNA ...    34   0.17 
gb|CN816292.1|CN816292  HRO4519_B03_D05ZS5 Lib AA071E1X Aven...    34   0.17 
gb|CN816725.1|CN816725  HRO4524_A10_B20ZS5 Lib AA071E1X Aven...    34   0.17 
gb|CN817685.1|CN817685  HRO4461_G09_N17ZS5 Lib AA070E1X Aven...    34   0.17 
gb|CN817698.1|CN817698  HRO4461_G03_N05ZS5 Lib AA070E1X Aven...    34   0.17 

>gb|CN814774.1|CN814774 HRO4502_D02_G04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_D02_G04, mRNA sequence
          Length = 323

 Score = 36.2 bits (18), Expect = 0.043
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 671 gcaagaagaagaagaagg 688
           ||||||||||||||||||
Sbjct: 16  gcaagaagaagaagaagg 33



>gb|BE439314.1|BE439314 CDO1015_WHE05E08F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
           CDO1015_WHE05E08, mRNA sequence
          Length = 430

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 669 gagcaagaagaagaaga 685
           |||||||||||||||||
Sbjct: 423 gagcaagaagaagaaga 407



>gb|BE439347.1|BE439347 CDO1015_WHE05E08R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
           CDO1015_WHE05E08, mRNA sequence
          Length = 443

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 669 gagcaagaagaagaaga 685
           |||||||||||||||||
Sbjct: 312 gagcaagaagaagaaga 328



>gb|CN816292.1|CN816292 HRO4519_B03_D05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4519_B03_D05, mRNA sequence
          Length = 538

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 667 gagagcaagaagaagaagaag 687
           ||||| |||||||||||||||
Sbjct: 19  gagagaaagaagaagaagaag 39



>gb|CN816725.1|CN816725 HRO4524_A10_B20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4524_A10_B20, mRNA sequence
          Length = 775

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 668 agagcaagaagaagaagaagg 688
           |||| ||||||||||||||||
Sbjct: 543 agaggaagaagaagaagaagg 563



>gb|CN817685.1|CN817685 HRO4461_G09_N17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4461_G09_N17, mRNA sequence
          Length = 625

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 672 caagaagaagaagaagg 688
           |||||||||||||||||
Sbjct: 299 caagaagaagaagaagg 315



>gb|CN817698.1|CN817698 HRO4461_G03_N05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4461_G03_N05, mRNA sequence
          Length = 448

 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 672 caagaagaagaagaagg 688
           |||||||||||||||||
Sbjct: 159 caagaagaagaagaagg 175



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2049
Number of Sequences: 8143
Number of extensions: 2049
Number of successful extensions: 691
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 21
length of query: 753
length of database: 4,702,463
effective HSP length: 16
effective length of query: 737
effective length of database: 4,572,175
effective search space: 3369692975
effective search space used: 3369692975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)