BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8612115.2.1
(1078 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817251.1|CN817251 HRO4464_E07_I14ZS5 Lib AA070E1X Aven... 36 0.059
gb|CN815990.1|CN815990 HRO4515_F09_L17ZS5 Lib AA071E1X Aven... 34 0.23
gb|CN816398.1|CN816398 HRO4520_C07_F14ZS5 Lib AA071E1X Aven... 34 0.23
>gb|CN817251.1|CN817251 HRO4464_E07_I14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_E07_I14, mRNA sequence
Length = 851
Score = 36.3 bits (18), Expect = 0.059
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 934 ggaggcacatgcttccat 951
||||||||||||||||||
Sbjct: 806 ggaggcacatgcttccat 823
>gb|CN815990.1|CN815990 HRO4515_F09_L17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_F09_L17, mRNA sequence
Length = 618
Score = 34.3 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1016 agagaccggaaagaagc 1032
|||||||||||||||||
Sbjct: 285 agagaccggaaagaagc 301
>gb|CN816398.1|CN816398 HRO4520_C07_F14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C07_F14, mRNA sequence
Length = 615
Score = 34.3 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 403 tcctcgacggcgtcgac 419
|||||||||||||||||
Sbjct: 104 tcctcgacggcgtcgac 120
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1663
Number of Sequences: 8143
Number of extensions: 1663
Number of successful extensions: 463
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 3
length of query: 1078
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1062
effective length of database: 4,572,175
effective search space: 4855649850
effective search space used: 4855649850
T: 0
A: 0
X1: 11 (21.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 17 (34.3 bits)