BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8011540.2.1
(1916 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ629310.1| Avena strigosa partial s5.6 gene for recept... 412 e-115
emb|AJ629309.1| Avena strigosa partial s5.8 gene for recept... 276 7e-074
emb|AJ629311.1| Avena strigosa partial s5.11 gene for recep... 135 2e-031
gb|CN816738.1|CN816738 HRO4524_C01_F02ZS5 Lib AA071E1X Aven... 62 2e-009
gb|BE439354.1|BE439354 CDO1407_WHE05G08R ITEC CDO Oat cDNA ... 40 0.007
gb|CN816551.1|CN816551 HRO4522_A09_A18ZS5 Lib AA071E1X Aven... 34 0.44
gb|CN816694.1|CN816694 HRO4523_F11_L20ZS5 Lib AA071E1X Aven... 34 0.44
gb|CN820007.1|CN820007 HRO4409_H06_O11ZS5 Lib AA069E1X Aven... 34 0.44
gb|CN821210.1|CN821210 HRO4428_G01_N02ZS5 Lib AA069E1X Aven... 34 0.44
>emb|AJ629310.1| Avena strigosa partial s5.6 gene for receptor-like-kinase
Length = 1410
Score = 412 bits (208), Expect = e-115
Identities = 307/340 (90%)
Strand = Plus / Minus
Query: 1057 gaggaggatccagaagttcatcttggtcagctcaaaaagttttcgttgcgggagcttcaa 1116
||||| || ||||||||||||||||||||||| || ||||| || ||||| |||||||||
Sbjct: 691 gaggaagacccagaagttcatcttggtcagcttaagaagttctcattgcgagagcttcaa 632
Query: 1117 gttgctactgatacttttagtaacaagcacattttaggaagaggtggttttggaaaagtg 1176
|| || |||||| ||||| ||| ||| ||||||||||||||||||||||||| ||||||
Sbjct: 631 gtcgcgtctgataattttaataataagaacattttaggaagaggtggttttggtaaagtg 572
Query: 1177 tacaagggaaggcttgctgatggctcattggtagcagtgaaaagactaaaagaggagcgc 1236
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 571 tacaaggggaggcttgcagatggtacattggtagcagtgaaaagactaaaagaggagcgc 512
Query: 1237 acacctggtggtgagcttcagtttcaaacagaggttgagatgattagcatggcagtgcac 1296
|| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct: 511 actcctggtggtgagctttagttccaaacagaagttgagatgattagcatggcagtgcat 452
Query: 1297 aggaaccttctccgacttcgtggtttctgcatgacacctactgaacggttgctggtctac 1356
||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||
Sbjct: 451 aggaaccttcttcggcttcgtggtttctgcatgacccctactgaacggttactagtctat 392
Query: 1357 ccatacatggctaatggcagtgtggcatcacgtttacgag 1396
||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 391 ccatacatggctaatgggagtgttgcatcacgtctacgag 352
Score = 200 bits (101), Expect = 3e-051
Identities = 173/197 (87%)
Strand = Plus / Minus
Query: 1411 gaaccacctcttaaatgggaaacaagaagacggattgcactgggatctgcaagaggtctt 1470
||||| |||||| | ||||| || ||||||||||||||||| ||||||||||| || ||
Sbjct: 204 gaaccgcctcttgattgggacaccagaagacggattgcacttggatctgcaaggggactc 145
Query: 1471 tcttacttgcatgatcactgcgatcctaagatcatccatcgggatgtcaaagctgcaaat 1530
||||||||||| |||||||| || || ||||||||||| || ||||||||||| ||||||
Sbjct: 144 tcttacttgcacgatcactgtgaccccaagatcatccaccgcgatgtcaaagccgcaaat 85
Query: 1531 attcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaagcttatg 1590
||||||||||| ||||| || |||||||| || |||||||| ||||||||||| ||||||
Sbjct: 84 attcttttggacgaggacttcgaggcagttgtgggtgattttgggcttgccaaacttatg 25
Query: 1591 gactacaaggataccca 1607
|| ||||||||||||||
Sbjct: 24 gattacaaggataccca 8
Score = 161 bits (81), Expect = 3e-039
Identities = 108/117 (92%)
Strand = Plus / Minus
Query: 938 ctggagcaatcgctggaggtgttgctgctggtgctgcattggtttttgctgttccagcaa 997
||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| || |
Sbjct: 916 ctggagctatcgctggtggtgttgctgctggtgctgctttggtgtttgctgttcctgcca 857
Query: 998 ttgcatttgcaatgtggcgccgtcgtaaacctgaagagcatttcttcgatgttcctg 1054
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 856 ttgcatttgcaatgtggcgccgtcgtaaacctgaagaacatttctttgatgtgcctg 800
Score = 107 bits (54), Expect = 4e-023
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 817 aataatccaaatctttgtggccctgttactacgaagccctgccctggggatcctcccttt 876
||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||| |||
Sbjct: 1135 aataatccacttctttgtggtcctggtactacaaagccctgccctggggatcctcctttt 1076
Query: 877 tccccaccgcctccattcaatcctcc 902
|||||||| ||||||| |||||||||
Sbjct: 1075 tccccacctcctccatacaatcctcc 1050
Score = 54.0 bits (27), Expect = 5e-007
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 751 aacaacctctcaggaccagtctcatccaatggctccttttcactcttcacccctataag 809
|||||||| || ||| |||| |||| | |||||| |||||||||||||||||||||||
Sbjct: 1281 aacaacctttcgggagcagttccatcgactggctctttttcactcttcacccctataag 1223
>emb|AJ629309.1| Avena strigosa partial s5.8 gene for receptor-like-kinase, exon 1
Length = 949
Score = 276 bits (139), Expect = 7e-074
Identities = 208/231 (90%)
Strand = Plus / Minus
Query: 1057 gaggaggatccagaagttcatcttggtcagctcaaaaagttttcgttgcgggagcttcaa 1116
||||| || ||||||||||||||||||||||| || ||||| || ||||| |||||||||
Sbjct: 231 gaggaagacccagaagttcatcttggtcagcttaagaagttctcattgcgagagcttcaa 172
Query: 1117 gttgctactgatacttttagtaacaagcacattttaggaagaggtggttttggaaaagtg 1176
|| || |||||| ||||| ||| ||| ||||||||||||||||||||||||| ||||||
Sbjct: 171 gtcgcgtctgataattttaataataagaacattttaggaagaggtggttttggtaaagtg 112
Query: 1177 tacaagggaaggcttgctgatggctcattggtagcagtgaaaagactaaaagaggagcgc 1236
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 111 tacaaggggaggcttgcagatggtacattggtagcagtgaaaagactaaaagaggagcgc 52
Query: 1237 acacctggtggtgagcttcagtttcaaacagaggttgagatgattagcatg 1287
|| |||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct: 51 actcctggtggtgagcttcagttccaaacagaagttgagatgatcagcatg 1
Score = 161 bits (81), Expect = 3e-039
Identities = 108/117 (92%)
Strand = Plus / Minus
Query: 938 ctggagcaatcgctggaggtgttgctgctggtgctgcattggtttttgctgttccagcaa 997
||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| || |
Sbjct: 456 ctggagctatcgctggtggtgttgctgctggtgctgctttggtgtttgctgttcctgcca 397
Query: 998 ttgcatttgcaatgtggcgccgtcgtaaacctgaagagcatttcttcgatgttcctg 1054
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 396 ttgcatttgcaatgtggcgccgtcgtaaacctgaagaacatttctttgatgtgcctg 340
Score = 107 bits (54), Expect = 4e-023
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 817 aataatccaaatctttgtggccctgttactacgaagccctgccctggggatcctcccttt 876
||||||||| ||||||||| |||| |||||| ||||||||||||||||||||||| |||
Sbjct: 675 aataatccacttctttgtggtcctggtactacaaagccctgccctggggatcctcctttt 616
Query: 877 tccccaccgcctccattcaatcctcc 902
|||||||| ||||||| |||||||||
Sbjct: 615 tccccacctcctccatacaatcctcc 590
Score = 54.0 bits (27), Expect = 5e-007
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 751 aacaacctctcaggaccagtctcatccaatggctccttttcactcttcacccctataag 809
|||||||| || ||| |||| |||| | |||||| |||||||||||||||||||||||
Sbjct: 821 aacaacctttcgggagcagttccatcgactggctctttttcactcttcacccctataag 763
>emb|AJ629311.1| Avena strigosa partial s5.11 gene for receptor-like-kinase
Length = 968
Score = 135 bits (68), Expect = 2e-031
Identities = 101/112 (90%)
Strand = Plus / Minus
Query: 943 gcaatcgctggaggtgttgctgctggtgctgcattggtttttgctgttccagcaattgca 1002
||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |
Sbjct: 410 gcaattgctggaggtgttgctgcgggtgccgcattggtatttgctgttcctgcaattgga 351
Query: 1003 tttgcaatgtggcgccgtcgtaaacctgaagagcatttcttcgatgttcctg 1054
|||||| ||||||| || ||||||||||||||||||||||| ||||| ||||
Sbjct: 350 tttgcattgtggcggcgacgtaaacctgaagagcatttctttgatgtccctg 299
Score = 113 bits (57), Expect = 6e-025
Identities = 162/197 (82%)
Strand = Plus / Minus
Query: 1054 gccgaggaggatccagaagttcatcttggtcagctcaaaaagttttcgttgcgggagctt 1113
|||||||||||||| ||||| || ||||||||||| || | ||| ||| | ||||||||
Sbjct: 225 gccgaggaggatccggaagtgcaccttggtcagctgaagaggttctcgcttagggagctt 166
Query: 1114 caagttgctactgatacttttagtaacaagcacattttaggaagaggtggttttggaaaa 1173
|||||||| | ||||| || || || ||| ||||| ||||||||||||||||||||||
Sbjct: 165 caagttgccagtgataacttcagcaataagaacattctaggaagaggtggttttggaaag 106
Query: 1174 gtgtacaagggaaggcttgctgatggctcattggtagcagtgaaaagactaaaagaggag 1233
||||||||||| | || | ||||| || |||||||||| |||||| ||||||| ||
Sbjct: 105 gtgtacaaggggcgactgacggatggtacactggtagcagtaaaaagattaaaagaagaa 46
Query: 1234 cgcacacctggtggtga 1250
|| || |||||||||||
Sbjct: 45 cgtactcctggtggtga 29
Score = 60.0 bits (30), Expect = 8e-009
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 817 aataatccaaatctttgtggccctgttactacgaagccctgccctggggatcctcccttt 876
||||||||||| |||||||| |||| |||||| | || ||||||||| |||||| |||
Sbjct: 663 aataatccaaacctttgtggtcctggtactacaacaccatgccctgggtctcctcctttt 604
Query: 877 tccccaccgcctccattcaatcctcc 902
|| ||||| ||||||| ||| |||||
Sbjct: 603 tctccaccacctccatacaaccctcc 578
Score = 38.2 bits (19), Expect = 0.028
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 780 tggctccttttcactcttcacccctat 806
|||||| ||||||||||| ||||||||
Sbjct: 774 tggctcattttcactctttacccctat 748
>gb|CN816738.1|CN816738 HRO4524_C01_F02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_C01_F02, mRNA sequence
Length = 537
Score = 61.9 bits (31), Expect = 2e-009
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 1624 cgtggaacaattggacacattgctcccgagtacctatccactggcaagtcctctgaaaag 1683
|||||||| || || ||||| || || ||||| || ||||| || ||||| || |||| |
Sbjct: 257 cgtggaactatgggtcacatagcccctgagtatctgtccacagggaagtcgtcggaaagg 316
Query: 1684 accgatgtttttggatatgggatcatgcttctggagctt 1722
|| ||||||||||| || |||||||||||||| ||||||
Sbjct: 317 acagatgtttttggttacgggatcatgcttcttgagctt 355
Score = 38.2 bits (19), Expect = 0.028
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 1480 catgatcactgcgatcctaagatcatccatcgggatgtcaaagctgcaaat 1530
||||| |||||| | || |||||||| || || ||||| ||||||||||||
Sbjct: 113 catgaacactgcaaccccaagatcatacaccgtgatgtaaaagctgcaaat 163
>gb|BE439354.1|BE439354 CDO1407_WHE05G08R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1407_WHE05G08, mRNA sequence
Length = 461
Score = 40.1 bits (20), Expect = 0.007
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1162 ggttttggaaaagtgtacaaggga 1185
|||||||||||||| |||||||||
Sbjct: 375 ggttttggaaaagtctacaaggga 398
>gb|CN816551.1|CN816551 HRO4522_A09_A18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_A09_A18, mRNA sequence
Length = 807
Score = 34.2 bits (17), Expect = 0.44
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1694 ttggatatgggatcatg 1710
|||||||||||||||||
Sbjct: 522 ttggatatgggatcatg 538
>gb|CN816694.1|CN816694 HRO4523_F11_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_F11_L20, mRNA sequence
Length = 876
Score = 34.2 bits (17), Expect = 0.44
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 885 gcctccattcaatcctc 901
|||||||||||||||||
Sbjct: 732 gcctccattcaatcctc 748
>gb|CN820007.1|CN820007 HRO4409_H06_O11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_H06_O11, mRNA
sequence
Length = 690
Score = 34.2 bits (17), Expect = 0.44
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 957 tgttgctgctggtgctg 973
|||||||||||||||||
Sbjct: 194 tgttgctgctggtgctg 178
>gb|CN821210.1|CN821210 HRO4428_G01_N02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_G01_N02, mRNA
sequence
Length = 578
Score = 34.2 bits (17), Expect = 0.44
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 978 ggtttttgctgttccag 994
|||||||||||||||||
Sbjct: 261 ggtttttgctgttccag 277
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4723
Number of Sequences: 8143
Number of extensions: 4723
Number of successful extensions: 1313
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 25
length of query: 1916
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1899
effective length of database: 4,564,032
effective search space: 8667096768
effective search space used: 8667096768
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)