BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010745.2.1
(805 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814852.1|CN814852 HRO4503_B11_D21ZS5 Lib AA071E1X Aven... 62 8e-010
gb|CN816521.1|CN816521 HRO4521_G01_M01ZS5 Lib AA071E1X Aven... 62 8e-010
gb|CN815410.1|CN815410 HRO4509_D02_G03ZS5 Lib AA071E1X Aven... 50 3e-006
gb|CN815195.1|CN815195 HRO4506_H10_O20ZS5 Lib AA071E1X Aven... 46 5e-005
gb|CN821160.1|CN821160 HRO4428_B09_D18ZS5 Lib AA069E1X Aven... 34 0.18
>gb|CN814852.1|CN814852 HRO4503_B11_D21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_B11_D21, mRNA sequence
Length = 502
Score = 61.9 bits (31), Expect = 8e-010
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 259 ccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcct 318
||||||||||||||| | || |||||||||||||||| |||||||||||||| ||||
Sbjct: 80 ccactcgaagttgtctatgagactccacacgaagtagccgcgcacgtttgctcctctcct 21
Query: 319 gag 321
|||
Sbjct: 20 gag 18
>gb|CN816521.1|CN816521 HRO4521_G01_M01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G01_M01, mRNA sequence
Length = 694
Score = 61.9 bits (31), Expect = 8e-010
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 259 ccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctccgttcct 318
||||||||||||||| | || |||||||||||||||| |||||||||||||| ||||
Sbjct: 351 ccactcgaagttgtctatgagactccacacgaagtagccacgcacgtttgctcctctcct 292
Query: 319 gag 321
|||
Sbjct: 291 gag 289
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 414 agtaaccgttctcagtaatata 435
||||||||||||||||||||||
Sbjct: 196 agtaaccgttctcagtaatata 175
>gb|CN815410.1|CN815410 HRO4509_D02_G03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_D02_G03, mRNA sequence
Length = 578
Score = 50.1 bits (25), Expect = 3e-006
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 197 gtcctctcctgggtgtcgaagtcnacgtggtacagcccgtacttcaacctgtaaccgaac 256
||||||||||| || | || || ||||||||||||||| || | | || |||||||
Sbjct: 198 gtcctctcctgcgttgcaaaatccacgtggtacagcccgaaccttacagtgaaaccgaaa 139
Query: 257 gcccactcgaagttgtccagcagcgtccacacgaagtagccccgcacgtttgctcc 312
|||||||||| ||||||| || |||||||||||||||| ||||| ||| ||||
Sbjct: 138 acccactcgaaattgtccatgagactccacacgaagtagccacgcacatttcctcc 83
>gb|CN815195.1|CN815195 HRO4506_H10_O20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_H10_O20, mRNA sequence
Length = 270
Score = 46.1 bits (23), Expect = 5e-005
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 410 tgcnagtaaccgttctcagtaatata 435
||| ||||||||||||||||||||||
Sbjct: 174 tgcgagtaaccgttctcagtaatata 149
>gb|CN821160.1|CN821160 HRO4428_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_B09_D18, mRNA
sequence
Length = 678
Score = 34.2 bits (17), Expect = 0.18
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 259 ccactcgaagttgtccagcag 279
|||||| ||||||||||||||
Sbjct: 420 ccactcaaagttgtccagcag 400
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1540
Number of Sequences: 8143
Number of extensions: 1540
Number of successful extensions: 448
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 7
length of query: 805
length of database: 4,702,463
effective HSP length: 16
effective length of query: 789
effective length of database: 4,572,175
effective search space: 3607446075
effective search space used: 3607446075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)