BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815072.1|CN815072 HRO4505_E09_I17ZS5 Lib AA071E1X Aven... 157 2e-038
gb|CN816663.1|CN816663 HRO4523_D03_H05ZS5 Lib AA071E1X Aven... 34 0.16
gb|CN816814.1|CN816814 HRO4525_B02_C03ZS5 Lib AA071E1X Aven... 34 0.16
gb|CN820533.1|CN820533 HRO4413_E02_I03ZS5 Lib AA069E1X Aven... 34 0.16
>gb|CN815072.1|CN815072 HRO4505_E09_I17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_E09_I17, mRNA sequence
Length = 451
Score = 157 bits (79), Expect = 2e-038
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 377 agttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgct 436
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 139 agttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgcc 80
Query: 437 gcggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcg 496
|||||||| || ||||| || | |||||| |||||||||||||||| ||||| || ||
Sbjct: 79 gcggacggaggacttgagcctggcctgcgacgcgaacacgttgtacgacgccaaacgccg 20
Query: 497 ccgccgcttcgcctccggg 515
|||||||||| ||||||||
Sbjct: 19 ccgccgcttcacctccggg 1
>gb|CN816663.1|CN816663 HRO4523_D03_H05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_D03_H05, mRNA sequence
Length = 708
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcc 682
||||| |||||||||||||||
Sbjct: 88 tcctcatcctcttcttcttcc 68
>gb|CN816814.1|CN816814 HRO4525_B02_C03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_B02_C03, mRNA sequence
Length = 633
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcc 682
||||| |||||||||||||||
Sbjct: 436 tcctcatcctcttcttcttcc 416
>gb|CN820533.1|CN820533 HRO4413_E02_I03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_E02_I03, mRNA
sequence
Length = 372
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttcc 682
||||| |||||||||||||||
Sbjct: 109 tcctcatcctcttcttcttcc 89
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1990
Number of Sequences: 8143
Number of extensions: 1990
Number of successful extensions: 697
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 4
length of query: 687
length of database: 4,702,463
effective HSP length: 16
effective length of query: 671
effective length of database: 4,572,175
effective search space: 3067929425
effective search space used: 3067929425
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)