BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 6293482.2.1
         (2042 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819820.1|CN819820  HRO4404_D10_H20ZS5 Lib AA069E1X Aven...    46   1e-004
gb|CN821347.1|CN821347  HRO4424_C08_F16ZS5 Lib AA069E1X Aven...    36   0.12 
gb|CN817583.1|CN817583  HRO4463_E09_I17ZS5 Lib AA070E1X Aven...    34   0.47 
gb|CN818286.1|CN818286  HRO4470_C04_F08ZS5 Lib AA070E1X Aven...    34   0.47 
gb|CN819019.1|CN819019  HRO4474_C03_F06ZS5 Lib AA070E1X Aven...    34   0.47 
gb|CN819056.1|CN819056  HRO4459_G08_M15ZS5 Lib AA070E1X Aven...    34   0.47 
gb|CN819915.1|CN819915  HRO4407_G09_N17ZS5 Lib AA069E1X Aven...    34   0.47 
gb|CN820144.1|CN820144  HRO4411_F08_L15ZS5 Lib AA069E1X Aven...    34   0.47 

>gb|CN819820.1|CN819820 HRO4404_D10_H20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4404_D10_H20, mRNA
           sequence
          Length = 379

 Score = 46.1 bits (23), Expect = 1e-004
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 441 ccagggcacatcctccgcccggacccgaacg 471
           |||||||| ||||||||||| ||||||||||
Sbjct: 37  ccagggcaaatcctccgccctgacccgaacg 7



>gb|CN821347.1|CN821347 HRO4424_C08_F16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4424_C08_F16, mRNA
            sequence
          Length = 521

 Score = 36.2 bits (18), Expect = 0.12
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1748 cgccgacgccgacgctgc 1765
            ||||||||||||||||||
Sbjct: 27   cgccgacgccgacgctgc 10



>gb|CN817583.1|CN817583 HRO4463_E09_I17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4463_E09_I17, mRNA sequence
          Length = 419

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 258 tatcatcatcatcatca 274
           |||||||||||||||||
Sbjct: 201 tatcatcatcatcatca 217



>gb|CN818286.1|CN818286 HRO4470_C04_F08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4470_C04_F08, mRNA sequence
          Length = 339

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 258 tatcatcatcatcatca 274
           |||||||||||||||||
Sbjct: 112 tatcatcatcatcatca 128



>gb|CN819019.1|CN819019 HRO4474_C03_F06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4474_C03_F06, mRNA sequence
          Length = 695

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 258 tatcatcatcatcatca 274
           |||||||||||||||||
Sbjct: 457 tatcatcatcatcatca 473



>gb|CN819056.1|CN819056 HRO4459_G08_M15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
            Avena sativa cDNA clone HRO4459_G08_M15, mRNA sequence
          Length = 595

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 2008 cttgcttgcttgcttgt 2024
            |||||||||||||||||
Sbjct: 252  cttgcttgcttgcttgt 236



>gb|CN819915.1|CN819915 HRO4407_G09_N17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4407_G09_N17, mRNA
            sequence
          Length = 776

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1970 tgtttttatggtggtat 1986
            |||||||||||||||||
Sbjct: 227  tgtttttatggtggtat 243



>gb|CN820144.1|CN820144 HRO4411_F08_L15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4411_F08_L15, mRNA
           sequence
          Length = 320

 Score = 34.2 bits (17), Expect = 0.47
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 180 tttattaattattaatt 196
           |||||||||||||||||
Sbjct: 15  tttattaattattaatt 31



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5070
Number of Sequences: 8143
Number of extensions: 5070
Number of successful extensions: 1675
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1651
Number of HSP's gapped (non-prelim): 20
length of query: 2042
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2025
effective length of database: 4,564,032
effective search space: 9242164800
effective search space used: 9242164800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)