BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 46 5e-005
gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Aven... 42 7e-004
gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Aven... 38 0.012
gb|CN821566.1|CN821566 HRO4426_G07_M14ZS5 Lib AA069E1X Aven... 34 0.18
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 46.1 bits (23), Expect = 5e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgctcga 1
>gb|CN821264.1|CN821264 HRO4423_D02_H03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_D02_H03, mRNA
sequence
Length = 733
Score = 42.1 bits (21), Expect = 7e-004
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 258 ctccaaccagggcttcatgttgccattgtaatg 290
||||||||| |||||||| || |||||||||||
Sbjct: 480 ctccaaccatggcttcatattcccattgtaatg 448
Score = 42.1 bits (21), Expect = 7e-004
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 601 tggaaactctctccacaagtctcaacagcaccgtttacctt 641
||||||||||||||||| ||||| || ||||| || |||||
Sbjct: 137 tggaaactctctccacaggtctccactgcaccattgacctt 97
>gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D01_H01, mRNA sequence
Length = 653
Score = 38.2 bits (19), Expect = 0.012
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 252 accaatctccaaccagggcttcatgttgccattgtaatg 290
|||||| |||| ||| ||||||||||| |||||| ||||
Sbjct: 534 accaatatccagccaaggcttcatgttaccattgaaatg 496
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 343 agaccaagaacatgcca 359
|||||||||||||||||
Sbjct: 443 agaccaagaacatgcca 427
>gb|CN821566.1|CN821566 HRO4426_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_G07_M14, mRNA
sequence
Length = 592
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 77 agcaagagagtactatg 93
|||||||||||||||||
Sbjct: 160 agcaagagagtactatg 176
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2097
Number of Sequences: 8143
Number of extensions: 2097
Number of successful extensions: 560
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 7
length of query: 798
length of database: 4,702,463
effective HSP length: 16
effective length of query: 782
effective length of database: 4,572,175
effective search space: 3575440850
effective search space used: 3575440850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)