BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820882.1|CN820882 HRO4421_A06_A11ZS5 Lib AA069E1X Aven... 254 9e-068
gb|CN816250.1|CN816250 HRO4518_F04_K08ZS5 Lib AA071E1X Aven... 36 0.042
>gb|CN820882.1|CN820882 HRO4421_A06_A11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_A06_A11, mRNA
sequence
Length = 788
Score = 254 bits (128), Expect = 9e-068
Identities = 263/308 (85%)
Strand = Plus / Minus
Query: 386 gaatgccttcccgcattgccacaagcttataaaaaacctcaggcgggcaatcaggttgat 445
|||| |||||||||| ||| |||||||| | || |||||||| ||||||||| ||||| |
Sbjct: 788 gaattccttcccgcaatgcaacaagcttctcaacaacctcagacgggcaatccggttggt 729
Query: 446 gttccagtatattagtgtaaatgagagtaaagctatccaaactctcagctgaagctagct 505
||||||| ||||| || ||||||||||| || ||||||| ||| ||||||||||| || |
Sbjct: 728 gttccagaatatttgtataaatgagagtgaaactatccagactttcagctgaagcaagtt 669
Query: 506 ccctcatatctgccagaatccgcactctgctttcaacttttgtcacgttgatgtgttccc 565
|||| | ||| ||||||| ||| |||||| | |||||||||||||| || ||| ||| |
Sbjct: 668 cccttagatcagccagaacccgtactctgttctcaacttttgtcacattagtgtattctc 609
Query: 566 tgaagaaatccataagcacctcttcatctaacctcatcctctctatcgtttcttctttta 625
||||||||||||||||||| |||||||||| |||||||||||| | | ||||||||||||
Sbjct: 608 tgaagaaatccataagcacttcttcatctagcctcatcctctcaaccatttcttctttta 549
Query: 626 tgtagtttttctgagaaaggagatggtcaacatagaccacaattgtttcctctatgcaag 685
|||||||||||||| || ||||| |||||||| || || ||||||||||||| |||||
Sbjct: 548 tgtagtttttctgactgagaagatgatcaacatatacaactattgtttcctctaggcaag 489
Query: 686 cctccaca 693
|||||||
Sbjct: 488 actccaca 481
>gb|CN816250.1|CN816250 HRO4518_F04_K08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_F04_K08, mRNA sequence
Length = 829
Score = 36.2 bits (18), Expect = 0.042
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 154 acaaaagaatgatcatag 171
||||||||||||||||||
Sbjct: 710 acaaaagaatgatcatag 727
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2014
Number of Sequences: 8143
Number of extensions: 2014
Number of successful extensions: 564
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 2
length of query: 721
length of database: 4,702,463
effective HSP length: 16
effective length of query: 705
effective length of database: 4,572,175
effective search space: 3223383375
effective search space used: 3223383375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)