BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4CL
(1986 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Aven... 125 2e-028
gb|CN816052.1|CN816052 HRO4516_D03_H06ZS5 Lib AA071E1X Aven... 40 0.007
gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRK... 36 0.12
gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Aven... 34 0.46
gb|CN816596.1|CN816596 HRO4522_F04_K08ZS5 Lib AA071E1X Aven... 34 0.46
gb|CN817447.1|CN817447 HRO4465_H12_P23ZS5 Lib AA070E1X Aven... 34 0.46
gb|CN817608.1|CN817608 HRO4463_D07_G13ZS5 Lib AA070E1X Aven... 34 0.46
gb|CN815675.1|CN815675 HRO4514_C08_E16ZS5 Lib AA071E1X Aven... 32 1.8
gb|CN816711.1|CN816711 HRO4523_H06_P11ZS5 Lib AA071E1X Aven... 32 1.8
gb|CN819166.1|CN819166 HRO4468_E10_I20ZS5 Lib AA070E1X Aven... 32 1.8
gb|CN814794.1|CN814794 HRO4502_E10_I20ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN814837.1|CN814837 HRO4503_A06_B11ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN814946.1|CN814946 HRO4504_B12_D24ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN815177.1|CN815177 HRO4506_G02_M04ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN815288.1|CN815288 HRO4508_A07_B14ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN815351.1|CN815351 HRO4508_G01_N02ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN815739.1|CN815739 HRO4510_A03_A06ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN816004.1|CN816004 HRO4515_G12_N23ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN816235.1|CN816235 HRO4518_D11_G22ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN817009.1|CN817009 HRO4527_C05_F09ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN817047.1|CN817047 HRO4527_F07_L13ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN817122.1|CN817122 HRO4528_E03_J06ZS5 Lib AA071E1X Aven... 30 7.1
gb|CN817338.1|CN817338 HRO4465_B10_D19ZS5 Lib AA070E1X Aven... 30 7.1
gb|CN817655.1|CN817655 HRO4463_A12_A23ZS5 Lib AA070E1X Aven... 30 7.1
gb|CN817773.1|CN817773 HRO4453_F08_L15ZS5 Lib AA070E1X Aven... 30 7.1
gb|CN818182.1|CN818182 HRO4471_B04_C07ZS5 Lib AA070E1X Aven... 30 7.1
gb|CN818402.1|CN818402 HRO4469_C12_F23ZS5 Lib AA070E1X Aven... 30 7.1
gb|CN819057.1|CN819057 HRO4459_G09_M17ZS5 Lib AA070E1X Aven... 30 7.1
gb|CN819123.1|CN819123 HRO4453_B01_D01ZS5 Lib AA070E1X Aven... 30 7.1
gb|CN819874.1|CN819874 HRO4407_B04_D07ZS5 Lib AA069E1X Aven... 30 7.1
gb|CN820092.1|CN820092 HRO4411_A04_B07ZS5 Lib AA069E1X Aven... 30 7.1
gb|CN821124.1|CN821124 HRO4427_G07_N13ZS5 Lib AA069E1X Aven... 30 7.1
gb|CN821391.1|CN821391 HRO4424_G07_N14ZS5 Lib AA069E1X Aven... 30 7.1
gb|M73232.1|ASTATPASEH Avena sativa vacuolar H+-ATPase 16 k... 30 7.1
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 30 7.1
gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphospha... 30 7.1
emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllid... 30 7.1
>gb|CN817366.1|CN817366 HRO4465_D03_H05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_D03_H05, mRNA sequence
Length = 633
Score = 125 bits (63), Expect = 2e-028
Identities = 114/131 (87%)
Strand = Plus / Plus
Query: 1447 gacgacggcgacgagatcttcatcgtcgaccggctcaaggagctcatcaagtacaagggg 1506
||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 24 gacgacgacgacgagatcttcatcgtcgacaggctcaaggagatcatcaagtacaagggc 83
Query: 1507 ttccaagtcgctccggcggagctcgaggccatgctcatcgcccaccccagcatcgtcgac 1566
||||| || || |||||||||||||||||| | |||||| | ||||| |||| |||
Sbjct: 84 ttccaggtggcgccggcggagctcgaggccctcctcatcacgcacccggacatcaaggac 143
Query: 1567 gccgccgtcgt 1577
|||||||||||
Sbjct: 144 gccgccgtcgt 154
Score = 40.1 bits (20), Expect = 0.007
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1644 gatcaccgaggacgagatcaagca 1667
|||||||||| |||||||||||||
Sbjct: 221 gatcaccgagaacgagatcaagca 244
Score = 32.2 bits (16), Expect = 1.8
Identities = 28/32 (87%)
Strand = Plus / Plus
Query: 1744 tccggcaagattttaaggaaggatctgagagc 1775
||||||||||| |||||||||| |||||||
Sbjct: 321 tccggcaagatcctaaggaaggacttgagagc 352
>gb|CN816052.1|CN816052 HRO4516_D03_H06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_D03_H06, mRNA sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.007
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1644 gatcaccgaggacgagatcaagca 1667
|||||||||| |||||||||||||
Sbjct: 88 gatcaccgagaacgagatcaagca 111
Score = 32.2 bits (16), Expect = 1.8
Identities = 28/32 (87%)
Strand = Plus / Plus
Query: 1744 tccggcaagattttaaggaaggatctgagagc 1775
||||||||||| |||||||||| |||||||
Sbjct: 188 tccggcaagatcctaaggaaggacttgagagc 219
>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
Length = 2073
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 590 ccggcgtcgccgtcgtcg 607
||||||||||||||||||
Sbjct: 224 ccggcgtcgccgtcgtcg 241
>gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_F10_L20, mRNA sequence
Length = 805
Score = 34.2 bits (17), Expect = 0.46
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1713 cttcttcgtggaggcca 1729
|||||||||||||||||
Sbjct: 89 cttcttcgtggaggcca 73
>gb|CN816596.1|CN816596 HRO4522_F04_K08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_F04_K08, mRNA sequence
Length = 265
Score = 34.2 bits (17), Expect = 0.46
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1107 catgggcaaggagctgc 1123
|||||||||||||||||
Sbjct: 54 catgggcaaggagctgc 70
>gb|CN817447.1|CN817447 HRO4465_H12_P23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_H12_P23, mRNA sequence
Length = 597
Score = 34.2 bits (17), Expect = 0.46
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 253 gtcctggagcgcctggcggagcgcc 277
||||| |||| ||||||||||||||
Sbjct: 173 gtccttgagcccctggcggagcgcc 149
>gb|CN817608.1|CN817608 HRO4463_D07_G13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_D07_G13, mRNA sequence
Length = 850
Score = 34.2 bits (17), Expect = 0.46
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 403 gtgatgctgcttctccc 419
|||||||||||||||||
Sbjct: 356 gtgatgctgcttctccc 340
>gb|CN815675.1|CN815675 HRO4514_C08_E16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_C08_E16, mRNA sequence
Length = 586
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 559 ccggcgttcgtcggca 574
||||||||||||||||
Sbjct: 255 ccggcgttcgtcggca 270
>gb|CN816711.1|CN816711 HRO4523_H06_P11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_H06_P11, mRNA sequence
Length = 708
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 453 gtgctcccgcctcggc 468
||||||||||||||||
Sbjct: 18 gtgctcccgcctcggc 3
>gb|CN819166.1|CN819166 HRO4468_E10_I20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_E10_I20, mRNA sequence
Length = 836
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1287 catcgacccggagacc 1302
||||||||||||||||
Sbjct: 352 catcgacccggagacc 367
>gb|CN814794.1|CN814794 HRO4502_E10_I20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_E10_I20, mRNA sequence
Length = 433
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1913 aacaagaagcagtca 1927
|||||||||||||||
Sbjct: 76 aacaagaagcagtca 90
>gb|CN814837.1|CN814837 HRO4503_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_A06_B11, mRNA sequence
Length = 648
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1463 tcttcatcgtcgacc 1477
|||||||||||||||
Sbjct: 336 tcttcatcgtcgacc 322
>gb|CN814946.1|CN814946 HRO4504_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_B12_D24, mRNA sequence
Length = 482
Score = 30.2 bits (15), Expect = 7.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 462 cctcggcgccgccgccacc 480
||||| |||||||||||||
Sbjct: 189 cctcgtcgccgccgccacc 207
>gb|CN815177.1|CN815177 HRO4506_G02_M04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_G02_M04, mRNA sequence
Length = 256
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 688 gaggcggcggcggcc 702
|||||||||||||||
Sbjct: 66 gaggcggcggcggcc 52
>gb|CN815288.1|CN815288 HRO4508_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_A07_B14, mRNA sequence
Length = 482
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1463 tcttcatcgtcgacc 1477
|||||||||||||||
Sbjct: 241 tcttcatcgtcgacc 255
>gb|CN815351.1|CN815351 HRO4508_G01_N02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_G01_N02, mRNA sequence
Length = 388
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1463 tcttcatcgtcgacc 1477
|||||||||||||||
Sbjct: 238 tcttcatcgtcgacc 252
>gb|CN815739.1|CN815739 HRO4510_A03_A06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_A03_A06, mRNA sequence
Length = 546
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 533 ccggcgccaccgtcg 547
|||||||||||||||
Sbjct: 242 ccggcgccaccgtcg 228
>gb|CN815837.1|CN815837 HRO4511_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_A06_B11, mRNA sequence
Length = 741
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 853 gacgtcgtcctctgc 867
|||||||||||||||
Sbjct: 506 gacgtcgtcctctgc 520
>gb|CN816004.1|CN816004 HRO4515_G12_N23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_G12_N23, mRNA sequence
Length = 837
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1216 tttgccaaggagccg 1230
|||||||||||||||
Sbjct: 380 tttgccaaggagccg 394
>gb|CN816235.1|CN816235 HRO4518_D11_G22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_D11_G22, mRNA sequence
Length = 710
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1913 aacaagaagcagtca 1927
|||||||||||||||
Sbjct: 370 aacaagaagcagtca 356
>gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_A07_B14, mRNA sequence
Length = 491
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 468 cgccgccgccaccac 482
|||||||||||||||
Sbjct: 213 cgccgccgccaccac 199
>gb|CN817009.1|CN817009 HRO4527_C05_F09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_C05_F09, mRNA sequence
Length = 547
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1463 tcttcatcgtcgacc 1477
|||||||||||||||
Sbjct: 146 tcttcatcgtcgacc 160
>gb|CN817047.1|CN817047 HRO4527_F07_L13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_F07_L13, mRNA sequence
Length = 569
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1519 ccggcggagctcgag 1533
|||||||||||||||
Sbjct: 123 ccggcggagctcgag 137
>gb|CN817122.1|CN817122 HRO4528_E03_J06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_E03_J06, mRNA sequence
Length = 572
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1559 tcgtcgacgccgccg 1573
|||||||||||||||
Sbjct: 84 tcgtcgacgccgccg 98
>gb|CN817338.1|CN817338 HRO4465_B10_D19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_B10_D19, mRNA sequence
Length = 312
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 468 cgccgccgccaccac 482
|||||||||||||||
Sbjct: 39 cgccgccgccaccac 25
>gb|CN817655.1|CN817655 HRO4463_A12_A23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_A12_A23, mRNA sequence
Length = 500
Score = 30.2 bits (15), Expect = 7.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 462 cctcggcgccgccgccacc 480
||||| |||||||||||||
Sbjct: 188 cctcgtcgccgccgccacc 206
>gb|CN817773.1|CN817773 HRO4453_F08_L15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_F08_L15, mRNA sequence
Length = 486
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 516 caagcaggcggcggc 530
|||||||||||||||
Sbjct: 80 caagcaggcggcggc 66
>gb|CN818182.1|CN818182 HRO4471_B04_C07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_B04_C07, mRNA sequence
Length = 782
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1483 aaggagctcatcaag 1497
|||||||||||||||
Sbjct: 478 aaggagctcatcaag 492
>gb|CN818402.1|CN818402 HRO4469_C12_F23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_C12_F23, mRNA sequence
Length = 423
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1129 ctgctgcgcgccaag 1143
|||||||||||||||
Sbjct: 129 ctgctgcgcgccaag 143
>gb|CN819057.1|CN819057 HRO4459_G09_M17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_G09_M17, mRNA sequence
Length = 644
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1010 cgctcgtgctgccca 1024
|||||||||||||||
Sbjct: 397 cgctcgtgctgccca 383
>gb|CN819123.1|CN819123 HRO4453_B01_D01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_B01_D01, mRNA sequence
Length = 669
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1010 cgctcgtgctgccca 1024
|||||||||||||||
Sbjct: 420 cgctcgtgctgccca 406
>gb|CN819874.1|CN819874 HRO4407_B04_D07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_B04_D07, mRNA
sequence
Length = 587
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1463 tcttcatcgtcgacc 1477
|||||||||||||||
Sbjct: 189 tcttcatcgtcgacc 203
>gb|CN820092.1|CN820092 HRO4411_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_A04_B07, mRNA
sequence
Length = 666
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1483 aaggagctcatcaag 1497
|||||||||||||||
Sbjct: 329 aaggagctcatcaag 343
>gb|CN821124.1|CN821124 HRO4427_G07_N13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_G07_N13, mRNA
sequence
Length = 664
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1483 aaggagctcatcaag 1497
|||||||||||||||
Sbjct: 343 aaggagctcatcaag 357
>gb|CN821391.1|CN821391 HRO4424_G07_N14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_G07_N14, mRNA
sequence
Length = 401
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1483 aaggagctcatcaag 1497
|||||||||||||||
Sbjct: 98 aaggagctcatcaag 112
>gb|M73232.1|ASTATPASEH Avena sativa vacuolar H+-ATPase 16 kDa proteolipid subunit
(vatp-P1) mRNA, complete cds
Length = 821
Score = 30.2 bits (15), Expect = 7.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 923 gcgccggcgcggcgctcgt 941
|||||| ||||||||||||
Sbjct: 180 gcgccgccgcggcgctcgt 198
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 462 cctcggcgccgccgc 476
|||||||||||||||
Sbjct: 175 cctcggcgccgccgc 189
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 690 ggcggcggcggccat 704
|||||||||||||||
Sbjct: 428 ggcggcggcggccat 442
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA,
complete cds; nuclear gene for chloroplast product
Length = 1577
Score = 30.2 bits (15), Expect = 7.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1129 ctgctgcgcgccaag 1143
|||||||||||||||
Sbjct: 1158 ctgctgcgcgccaag 1172
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase
Length = 1146
Score = 30.2 bits (15), Expect = 7.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1449 cgacggcgacgagatcttc 1467
|||||||||||||| ||||
Sbjct: 530 cgacggcgacgagagcttc 548
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4649
Number of Sequences: 8143
Number of extensions: 4649
Number of successful extensions: 1506
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 80
length of query: 1986
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1969
effective length of database: 4,564,032
effective search space: 8986579008
effective search space used: 8986579008
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)