BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 44956.2.1
         (1252 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819631.1|CN819631  HRO4402_D07_G14ZS5 Lib AA069E1X Aven...   311   8e-085
gb|CN815177.1|CN815177  HRO4506_G02_M04ZS5 Lib AA071E1X Aven...    38   0.018
gb|CN817474.1|CN817474  HRO4466_B09_D18ZS5 Lib AA070E1X Aven...    38   0.018
gb|AF033096.1|AF033096  Avena sativa nonphototropic hypocoty...    36   0.073
gb|CN815174.1|CN815174  HRO4506_F11_K22ZS5 Lib AA071E1X Aven...    34   0.29 
gb|CN818014.1|CN818014  HRO4472_F04_K08ZS5 Lib AA070E1X Aven...    34   0.29 

>gb|CN819631.1|CN819631 HRO4402_D07_G14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4402_D07_G14, mRNA
           sequence
          Length = 541

 Score =  311 bits (157), Expect = 8e-085
 Identities = 292/337 (86%)
 Strand = Plus / Minus

                                                                       
Query: 201 ttacattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggg 260
           ||||||||||||||| || ||||  |||||||||||||| || || ||||  || || ||
Sbjct: 357 ttacattaccatcccaccatcaacggtaagcacctgtccggtgatgtagccggcagcagg 298

                                                                       
Query: 261 gttaagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaa 320
            || |||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 297 attcagggccaggaactcaaccaacccagcaacttcctctggctggccatatctccccaa 238

                                                                       
Query: 321 cggaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcaga 380
            ||||| || ||||||||||||||||| | ||| ||||||||||| || ||||| || ||
Sbjct: 237 gggaatagtcgacaagattttcttctcgatctcctctccaagttcagcggtcatgtctga 178

                                                                       
Query: 381 tgcaatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggc 440
           ||| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||
Sbjct: 177 tgcgatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagc 118

                                                                       
Query: 441 aactgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaac 500
           ||||||||||||||| ||||| || ||||||||||| || || ||||||||||||||| |
Sbjct: 117 aactgtttttgtgaagccaatgaccccagccttggcagcactgtaattagcttggccagc 58

                                                
Query: 501 attgccagtaagaccaactacagatgcaatgttgata 537
           |||||||||||||||||| || ||||| |||||||||
Sbjct: 57  attgccagtaagaccaacaactgatgctatgttgata 21



>gb|CN815177.1|CN815177 HRO4506_G02_M04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4506_G02_M04, mRNA sequence
          Length = 256

 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1071 gcgggaggcggcggcggcc 1089
            |||||||||||||||||||
Sbjct: 70   gcgggaggcggcggcggcc 52



>gb|CN817474.1|CN817474 HRO4466_B09_D18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
            Avena sativa cDNA clone HRO4466_B09_D18, mRNA sequence
          Length = 702

 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1167 cgcgaaggagccgaagagg 1185
            |||||||||||||||||||
Sbjct: 73   cgcgaaggagccgaagagg 55



>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
          Length = 3467

 Score = 36.2 bits (18), Expect = 0.073
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 1134 ggcggcggcggtggccatgagg 1155
            ||||||||||| ||||||||||
Sbjct: 425  ggcggcggcggcggccatgagg 446



>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4506_F11_K22, mRNA sequence
          Length = 584

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1132 gtggcggcggcggtggc 1148
            |||||||||||||||||
Sbjct: 175  gtggcggcggcggtggc 191



>gb|CN818014.1|CN818014 HRO4472_F04_K08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
            Avena sativa cDNA clone HRO4472_F04_K08, mRNA sequence
          Length = 816

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1114 gagactgctgctgctac 1130
            |||||||||||||||||
Sbjct: 446  gagactgctgctgctac 430



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3679
Number of Sequences: 8143
Number of extensions: 3679
Number of successful extensions: 1061
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 18
length of query: 1252
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1236
effective length of database: 4,572,175
effective search space: 5651208300
effective search space used: 5651208300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)