BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871943.2.1
(1085 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814849.1|CN814849 HRO4503_B08_D15ZS5 Lib AA071E1X Aven... 34 0.25
gb|CN820097.1|CN820097 HRO4411_A10_B19ZS5 Lib AA069E1X Aven... 34 0.25
gb|CN820170.1|CN820170 HRO4411_H12_P23ZS5 Lib AA069E1X Aven... 34 0.25
gb|CN820315.1|CN820315 HRO4418_A03_A06ZS5 Lib AA069E1X Aven... 34 0.25
gb|CN820969.1|CN820969 HRO4422_A07_A14ZS5 Lib AA069E1X Aven... 34 0.25
gb|CN821021.1|CN821021 HRO4422_F06_K12ZS5 Lib AA069E1X Aven... 34 0.25
>gb|CN814849.1|CN814849 HRO4503_B08_D15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_B08_D15, mRNA sequence
Length = 554
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 550 tgaggtcgccgatggtg 566
|||||||||||||||||
Sbjct: 164 tgaggtcgccgatggtg 148
>gb|CN820097.1|CN820097 HRO4411_A10_B19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_A10_B19, mRNA
sequence
Length = 542
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 550 tgaggtcgccgatggtg 566
|||||||||||||||||
Sbjct: 169 tgaggtcgccgatggtg 153
>gb|CN820170.1|CN820170 HRO4411_H12_P23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_H12_P23, mRNA
sequence
Length = 559
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 550 tgaggtcgccgatggtg 566
|||||||||||||||||
Sbjct: 168 tgaggtcgccgatggtg 152
>gb|CN820315.1|CN820315 HRO4418_A03_A06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_A03_A06, mRNA
sequence
Length = 597
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 999 ttgccctcagcagagaa 1015
|||||||||||||||||
Sbjct: 204 ttgccctcagcagagaa 220
>gb|CN820969.1|CN820969 HRO4422_A07_A14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_A07_A14, mRNA
sequence
Length = 761
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 999 ttgccctcagcagagaa 1015
|||||||||||||||||
Sbjct: 227 ttgccctcagcagagaa 243
>gb|CN821021.1|CN821021 HRO4422_F06_K12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_F06_K12, mRNA
sequence
Length = 725
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 999 ttgccctcagcagagaa 1015
|||||||||||||||||
Sbjct: 199 ttgccctcagcagagaa 215
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1945
Number of Sequences: 8143
Number of extensions: 1945
Number of successful extensions: 565
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 6
length of query: 1085
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1069
effective length of database: 4,572,175
effective search space: 4887655075
effective search space used: 4887655075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)