BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3858636.2.1
(907 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 347 1e-095
gb|CN817035.1|CN817035 HRO4527_E07_J13ZS5 Lib AA071E1X Aven... 133 3e-031
gb|CN815319.1|CN815319 HRO4508_D04_H08ZS5 Lib AA071E1X Aven... 58 1e-008
gb|BE439042.1|BE439042 CDO215_WHE2D0041F ITEC CDO Oat cDNA ... 54 2e-007
gb|CN821598.1|CN821598 HRO4408_B04_D08ZS5 Lib AA069E1X Aven... 54 2e-007
gb|AB128046.1|AB128046 AB128046 Avena sativa leaf 7-day-old... 50 3e-006
gb|CN815013.1|CN815013 HRO4504_H08_P16ZS5 Lib AA071E1X Aven... 34 0.21
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 347 bits (175), Expect = 1e-095
Identities = 271/303 (89%)
Strand = Plus / Plus
Query: 320 gtgttctccaagatcaacaggttcgaggaggagctgcgcgaggcgctgcccagggagatg 379
|||||||||||||||| || ||||||||||||||||||| |||||||||| |||||||
Sbjct: 28 gtgttctccaagatcaccaagttcgaggaggagctgcgctcggcgctgccccgggagatc 87
Query: 380 gaggccgcccgcgtggccttcgagaccggcgccgcgccgatcgccaacaggatcaaggag 439
|||||||||||||| ||||||||||||||| ||||||||||| | ||| ||||||||||
Sbjct: 88 gaggccgcccgcgtcgccttcgagaccggcaccgcgccgatcccgaacctgatcaaggag 147
Query: 440 agccggtcgtacccgctgtaccgcttcatccgccaggacctcggcgccgtgtacctgacc 499
||| |||| | |||||||||||||||| ||||| |||| || ||| ||||||||| |||
Sbjct: 148 agcaggtctttcccgctgtaccgcttcgtccgcgaggagctgggctgcgtgtacctcacc 207
Query: 500 ggcgagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctggccctcagcgag 559
|||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct: 208 ggcgagaaactcctgtcccccggcgaggagtgcaacaaggtgttcctgggcatcagccag 267
Query: 560 ggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgccc 619
||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||||||
Sbjct: 268 ggcaagctcatcgaccccatgctggagtgcctcaaggagtggaacggcgagcccctgccc 327
Query: 620 atc 622
|||
Sbjct: 328 atc 330
>gb|CN817035.1|CN817035 HRO4527_E07_J13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_E07_J13, mRNA sequence
Length = 418
Score = 133 bits (67), Expect = 3e-031
Identities = 91/99 (91%)
Strand = Plus / Plus
Query: 524 gaggagtgcaacaaggtgttcctggccctcagcgagggcaagctcatcgaccccatgctc 583
|||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct: 11 gaggagtgcaactaggtgttcctgggcatcagccagggcaagctcatcgaccccatgctg 70
Query: 584 gactgcctcaaggagtgggacggcaagcccctgcccatc 622
|| ||||||||||||||| ||||| ||||||||||||||
Sbjct: 71 gagtgcctcaaggagtggaacggcgagcccctgcccatc 109
>gb|CN815319.1|CN815319 HRO4508_D04_H08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_D04_H08, mRNA sequence
Length = 417
Score = 58.0 bits (29), Expect = 1e-008
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 534 acaaggtgttcctggccctcagcgagggcaagctcatcgaccccatgctcgactgcctca 593
||||||||||| | ||| | | | ||||||||| ||||||| | |||| || |||||||
Sbjct: 23 acaaggtgttcgttgccatgaacaagggcaagcacatcgacgctctgcttgagtgcctca 82
Query: 594 aggagtgggacggcaagcccctgcccatctgct 626
|||||||| |||| |||||||||| |||||||
Sbjct: 83 aggagtggaacggtgagcccctgcctatctgct 115
>gb|BE439042.1|BE439042 CDO215_WHE2D0041F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO215_WHE2D0041, mRNA sequence
Length = 341
Score = 54.0 bits (27), Expect = 2e-007
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 563 aagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgcccatc 622
|||| ||||||||| |||| || ||||||||||||||| ||||| ||||| |||| ||
Sbjct: 328 aagcacatcgacccgctgctggagtgcctcaaggagtggaacggcgagcccttgccactc 269
Query: 623 tgctgag 629
|||||||
Sbjct: 268 tgctgag 262
>gb|CN821598.1|CN821598 HRO4408_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_B04_D08, mRNA
sequence
Length = 371
Score = 54.0 bits (27), Expect = 2e-007
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 587 tgcctcaaggagtgggacggcaagcccctgcccatctgctgag 629
||||||||||||||| ||||| |||||||||| |||||||||
Sbjct: 13 tgcctcaaggagtggaacggcgagcccctgccgctctgctgag 55
>gb|AB128046.1|AB128046 AB128046 Avena sativa leaf 7-day-old Avena sativa cDNA clone VRG86,
mRNA sequence
Length = 936
Score = 50.1 bits (25), Expect = 3e-006
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 558 agggcaagctcatcgaccccatgctcgactgcctcaaggagtgggacggcaagcccctgc 617
||||||||| ||||||| | |||| || ||||||||||||||| ||||| |||| ||||
Sbjct: 343 agggcaagcacatcgacgcgctgcttgagtgcctcaaggagtggaacggcgagccactgc 284
Query: 618 c 618
|
Sbjct: 283 c 283
>gb|CN815013.1|CN815013 HRO4504_H08_P16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_H08_P16, mRNA sequence
Length = 459
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 532 caacaaggtgttcctgg 548
|||||||||||||||||
Sbjct: 105 caacaaggtgttcctgg 121
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2186
Number of Sequences: 8143
Number of extensions: 2186
Number of successful extensions: 615
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 7
length of query: 907
length of database: 4,702,463
effective HSP length: 16
effective length of query: 891
effective length of database: 4,572,175
effective search space: 4073807925
effective search space used: 4073807925
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)