BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848939.2.1
(952 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Aven... 78 2e-014
gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Aven... 78 2e-014
gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Aven... 76 6e-014
gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Aven... 76 6e-014
gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Aven... 58 2e-008
gb|CN815734.1|CN815734 HRO4514_H10_O20ZS5 Lib AA071E1X Aven... 52 9e-007
gb|CN816556.1|CN816556 HRO4522_B02_C04ZS5 Lib AA071E1X Aven... 52 9e-007
gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Aven... 50 4e-006
gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Aven... 50 4e-006
gb|CN817017.1|CN817017 HRO4527_D01_H01ZS5 Lib AA071E1X Aven... 38 0.014
gb|CN817282.1|CN817282 HRO4464_G06_M12ZS5 Lib AA070E1X Aven... 36 0.055
>gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H01_O02, mRNA sequence
Length = 405
Score = 77.8 bits (39), Expect = 2e-014
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 5 gccgacctcgacgccgccctctgcctctgcaccgccatcaaggccaa 51
>gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G03_N05, mRNA sequence
Length = 388
Score = 77.8 bits (39), Expect = 2e-014
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 7 gccgacctcgacgccgccctctgcctctgcaccgccatcaaggccaa 53
>gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A11_A22, mRNA sequence
Length = 684
Score = 75.8 bits (38), Expect = 6e-014
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 365 ccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
|||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 302 ccgacctcgacgccgccctctgcctctgcaccgccatcaaggccaa 347
>gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G06_M11, mRNA sequence
Length = 546
Score = 75.8 bits (38), Expect = 6e-014
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 365 ccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
|||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 148 ccgacctcgacgccgccctctgcctctgcaccgccatcaaggccaa 193
>gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_A03_A05, mRNA sequence
Length = 374
Score = 58.0 bits (29), Expect = 2e-008
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 370 ctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
||||||||||| |||||||||||||| |||||||||||||
Sbjct: 1 ctcgacgccgccatctgcctctgcaccgccatcaaggccaa 41
>gb|CN815734.1|CN815734 HRO4514_H10_O20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_H10_O20, mRNA sequence
Length = 492
Score = 52.0 bits (26), Expect = 9e-007
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 366 cgacctcgacgccgcgctctgcctctgcaccaccatcaaggc 407
||||||||||||||| |||||||||||||| || |||||||
Sbjct: 132 cgacctcgacgccgccgtctgcctctgcaccgccgtcaaggc 173
>gb|CN816556.1|CN816556 HRO4522_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_B02_C04, mRNA sequence
Length = 446
Score = 52.0 bits (26), Expect = 9e-007
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 366 cgacctcgacgccgcgctctgcctctgcaccaccatcaaggc 407
||||||||||||||| |||||||||||||| || |||||||
Sbjct: 30 cgacctcgacgccgccgtctgcctctgcaccgccgtcaaggc 71
>gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_D08_H16, mRNA sequence
Length = 419
Score = 50.1 bits (25), Expect = 4e-006
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 385 tgcctctgcaccaccatcaaggccaaggcgctc 417
|||||||||||| ||||||||||||||| ||||
Sbjct: 37 tgcctctgcaccgccatcaaggccaaggtgctc 69
>gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A05_B10, mRNA
sequence
Length = 457
Score = 50.1 bits (25), Expect = 4e-006
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 385 tgcctctgcaccaccatcaaggccaaggcgctc 417
|||||||||||| ||||||||||||||| ||||
Sbjct: 75 tgcctctgcaccgccatcaaggccaaggtgctc 107
>gb|CN817017.1|CN817017 HRO4527_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_D01_H01, mRNA sequence
Length = 447
Score = 38.2 bits (19), Expect = 0.014
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 368 acctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
||||||| || || |||||||||||||| |||| ||||||||
Sbjct: 75 acctcgatgctgccctctgcctctgcactgccattaaggccaa 117
>gb|CN817282.1|CN817282 HRO4464_G06_M12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_G06_M12, mRNA sequence
Length = 783
Score = 36.2 bits (18), Expect = 0.055
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 91 tcgtcgtcgtcgtcatcg 108
||||||||||||||||||
Sbjct: 275 tcgtcgtcgtcgtcatcg 258
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2408
Number of Sequences: 8143
Number of extensions: 2408
Number of successful extensions: 798
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 19
length of query: 952
length of database: 4,702,463
effective HSP length: 16
effective length of query: 936
effective length of database: 4,572,175
effective search space: 4279555800
effective search space used: 4279555800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)