BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848767.2.1
(1467 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815989.1|CN815989 HRO4515_F08_L15ZS5 Lib AA071E1X Aven... 36 0.085
gb|CN816784.1|CN816784 HRO4524_G03_N06ZS5 Lib AA071E1X Aven... 36 0.085
gb|CN817127.1|CN817127 HRO4528_E08_J16ZS5 Lib AA071E1X Aven... 36 0.085
gb|CN817342.1|CN817342 HRO4458_C09_F18ZS5 Lib AA070E1X Aven... 36 0.085
gb|CN819191.1|CN819191 HRO4451_B12_C23ZS5 Lib AA070E1X Aven... 36 0.085
gb|CN815823.1|CN815823 HRO4510_H04_O08ZS5 Lib AA071E1X Aven... 34 0.34
gb|CN816606.1|CN816606 HRO4522_G03_M06ZS5 Lib AA071E1X Aven... 34 0.34
gb|CN819460.1|CN819460 HRO4406_B09_C18ZS5 Lib AA069E1X Aven... 34 0.34
gb|CN821205.1|CN821205 HRO4428_F08_L16ZS5 Lib AA069E1X Aven... 34 0.34
>gb|CN815989.1|CN815989 HRO4515_F08_L15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_F08_L15, mRNA sequence
Length = 809
Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 928 agctggcgccagtcgatg 945
||||||||||||||||||
Sbjct: 791 agctggcgccagtcgatg 774
>gb|CN816784.1|CN816784 HRO4524_G03_N06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_G03_N06, mRNA sequence
Length = 530
Score = 36.2 bits (18), Expect = 0.085
Identities = 36/42 (85%)
Strand = Plus / Minus
Query: 390 ctcgccccagctggcgctccacgagttcttcacgatccagta 431
|||||||||| | ||| |||||||||||| | |||||||||
Sbjct: 191 ctcgccccagttctcgccccacgagttctttatgatccagta 150
>gb|CN817127.1|CN817127 HRO4528_E08_J16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_E08_J16, mRNA sequence
Length = 700
Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 239 gaaccatcttgatcacat 256
||||||||||||||||||
Sbjct: 629 gaaccatcttgatcacat 612
>gb|CN817342.1|CN817342 HRO4458_C09_F18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_C09_F18, mRNA sequence
Length = 675
Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 239 gaaccatcttgatcacat 256
||||||||||||||||||
Sbjct: 110 gaaccatcttgatcacat 93
>gb|CN819191.1|CN819191 HRO4451_B12_C23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_B12_C23, mRNA sequence
Length = 854
Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 239 gaaccatcttgatcacat 256
||||||||||||||||||
Sbjct: 156 gaaccatcttgatcacat 139
>gb|CN815823.1|CN815823 HRO4510_H04_O08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_H04_O08, mRNA sequence
Length = 582
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1314 ggtggtggtggtggtgt 1330
|||||||||||||||||
Sbjct: 253 ggtggtggtggtggtgt 269
>gb|CN816606.1|CN816606 HRO4522_G03_M06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_G03_M06, mRNA sequence
Length = 552
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1314 ggtggtggtggtggtgt 1330
|||||||||||||||||
Sbjct: 279 ggtggtggtggtggtgt 295
>gb|CN819460.1|CN819460 HRO4406_B09_C18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_B09_C18, mRNA
sequence
Length = 660
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 649 ttcttctccttgctggc 665
|||||||||||||||||
Sbjct: 212 ttcttctccttgctggc 196
>gb|CN821205.1|CN821205 HRO4428_F08_L16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_F08_L16, mRNA
sequence
Length = 530
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1314 ggtggtggtggtggtgt 1330
|||||||||||||||||
Sbjct: 147 ggtggtggtggtggtgt 163
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3067
Number of Sequences: 8143
Number of extensions: 3067
Number of successful extensions: 982
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 14
length of query: 1467
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1450
effective length of database: 4,564,032
effective search space: 6617846400
effective search space used: 6617846400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)