BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3838122.2.1
(1865 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821442.1|CN821442 HRO4425_D03_G05ZS5 Lib AA069E1X Aven... 141 3e-033
gb|CN820016.1|CN820016 HRO4410_B02_C04ZS5 Lib AA069E1X Aven... 111 2e-024
gb|CN817723.1|CN817723 HRO4461_E08_J15ZS5 Lib AA070E1X Aven... 34 0.43
gb|CN819662.1|CN819662 HRO4402_G02_M04ZS5 Lib AA069E1X Aven... 34 0.43
>gb|CN821442.1|CN821442 HRO4425_D03_G05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_D03_G05, mRNA
sequence
Length = 502
Score = 141 bits (71), Expect = 3e-033
Identities = 167/199 (83%)
Strand = Plus / Minus
Query: 355 gccatgtagtcgtggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtg 414
||||||||| | |||||||| || |||||||| || |||||| ||| | ||||| |||
Sbjct: 314 gccatgtaggcctggttgtaggaggagtccatttcatggacggtgaggctggtggcggtg 255
Query: 415 acccgcgcggcggtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcg 474
||||| || ||||||| ||||||||||| | || || |||||||||||||||||||||
Sbjct: 254 acccgggcaccggtggcattgttgaagagatacactccagcgttggcgtagatggcctcg 195
Query: 475 gtggggtagacgcgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatg 534
|| ||||| || |||||||| |||| |||||||| |||||||| ||||||||||||||
Sbjct: 194 gtcgggtacacacgcgatgtcacggtcgacctcccaccctgcgcaaagctctcgacgatt 135
Query: 535 gagtggtcgacgagcaccc 553
|||||||| || |||||||
Sbjct: 134 gagtggtccaccagcaccc 116
>gb|CN820016.1|CN820016 HRO4410_B02_C04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B02_C04, mRNA
sequence
Length = 525
Score = 111 bits (56), Expect = 2e-024
Identities = 146/176 (82%)
Strand = Plus / Minus
Query: 367 tggttgtatgacgagtccatctcgtggacgacgagcttcgtggccgtgacccgcgcggcg 426
|||||||| || || |||||||| ||||||||||| | ||||| || ||||| || |
Sbjct: 288 tggttgtaggaggaatccatctcatggacgacgaggctggtggcggtcacccgggcacca 229
Query: 427 gtggcgttgttgaagaggaagacgccggcgttggcgtagatggcctcggtggggtagacg 486
||||||||||||||||| | || ||||||||||| ||||| |||||||| ||||| |||
Sbjct: 228 gtggcgttgttgaagagatacactccggcgttggcatagatagcctcggtcgggtacacg 169
Query: 487 cgcgatgtggcggtggacctcccgccctgcgcgaagctctcgacgatggagtggtc 542
||||| || | || || ||||| |||||| |||||||||||||||| ||||||||
Sbjct: 168 cgcgacgtcactgtcgatctcccaccctgcacgaagctctcgacgattgagtggtc 113
>gb|CN817723.1|CN817723 HRO4461_E08_J15ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E08_J15, mRNA sequence
Length = 593
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1352 tggccgacgccctgcct 1368
|||||||||||||||||
Sbjct: 291 tggccgacgccctgcct 275
>gb|CN819662.1|CN819662 HRO4402_G02_M04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G02_M04, mRNA
sequence
Length = 578
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 100 acagcatcatacatgca 116
|||||||||||||||||
Sbjct: 488 acagcatcatacatgca 472
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4452
Number of Sequences: 8143
Number of extensions: 4452
Number of successful extensions: 1260
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1254
Number of HSP's gapped (non-prelim): 6
length of query: 1865
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1848
effective length of database: 4,564,032
effective search space: 8434331136
effective search space used: 8434331136
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)