BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3829483.2.1
         (1069 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE439371.1|BE439371  CDO1510_WHE05H09R ITEC CDO Oat cDNA ...    94   3e-019
gb|CN817279.1|CN817279  HRO4464_G03_M06ZS5 Lib AA070E1X Aven...    34   0.25 
gb|CN818239.1|CN818239  HRO4470_F07_L14ZS5 Lib AA070E1X Aven...    34   0.25 
gb|CN818403.1|CN818403  HRO4457_C04_F07ZS5 Lib AA070E1X Aven...    34   0.25 
gb|CN818574.1|CN818574  HRO4467_A01_A01ZS5 Lib AA070E1X Aven...    34   0.25 
gb|CN818769.1|CN818769  HRO4468_D03_G06ZS5 Lib AA070E1X Aven...    34   0.25 
emb|AJ251050.1|AFA251050  Avena fatua mRNA for VIP1 protein ...    34   0.25 

>gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
           CDO1510_WHE05H09, mRNA sequence
          Length = 237

 Score = 93.7 bits (47), Expect = 3e-019
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                       
Query: 154 caagagcgagctgctcctcgagtccaacccggtgcacaagaaggtgcccgtgctcctcca 213
           |||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 136 caagggcgagctcctcctcaagtacaacccggtgcacaagaaggtgcccgtgctcatcca 195

                  
Query: 214 caacggc 220
           |||||||
Sbjct: 196 caacggc 202



>gb|CN817279.1|CN817279 HRO4464_G03_M06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4464_G03_M06, mRNA sequence
          Length = 349

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 119 agctacgaggacgtggaggag 139
           |||||||| ||||||||||||
Sbjct: 33  agctacgacgacgtggaggag 53



>gb|CN818239.1|CN818239 HRO4470_F07_L14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4470_F07_L14, mRNA sequence
          Length = 716

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 119 agctacgaggacgtggaggag 139
           |||||||| ||||||||||||
Sbjct: 414 agctacgacgacgtggaggag 434



>gb|CN818403.1|CN818403 HRO4457_C04_F07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4457_C04_F07, mRNA sequence
          Length = 472

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 119 agctacgaggacgtggaggag 139
           |||||||| ||||||||||||
Sbjct: 147 agctacgacgacgtggaggag 167



>gb|CN818574.1|CN818574 HRO4467_A01_A01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4467_A01_A01, mRNA sequence
          Length = 638

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 119 agctacgaggacgtggaggag 139
           |||||||| ||||||||||||
Sbjct: 366 agctacgacgacgtggaggag 386



>gb|CN818769.1|CN818769 HRO4468_D03_G06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4468_D03_G06, mRNA sequence
          Length = 366

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 119 agctacgaggacgtggaggag 139
           |||||||| ||||||||||||
Sbjct: 290 agctacgacgacgtggaggag 270



>emb|AJ251050.1|AFA251050 Avena fatua mRNA for VIP1 protein (vip1 gene)
          Length = 1061

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 159 gcgagctgctcctcgag 175
           |||||||||||||||||
Sbjct: 242 gcgagctgctcctcgag 226



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2199
Number of Sequences: 8143
Number of extensions: 2199
Number of successful extensions: 617
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 8
length of query: 1069
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1053
effective length of database: 4,572,175
effective search space: 4814500275
effective search space used: 4814500275
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)