BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3748380.2.1
         (1272 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY597512.1|  Avena sativa leafy hull sterile 1 (LHS1) mRN...   139   7e-033
gb|CN815876.1|CN815876  HRO4511_E01_J01ZS5 Lib AA071E1X Aven...    38   0.019
gb|CN815646.1|CN815646  HRO4513_H12_O23ZS5 Lib AA071E1X Aven...    36   0.074
gb|CN821571.1|CN821571  HRO4426_G12_M24ZS5 Lib AA069E1X Aven...    34   0.29 

>gb|AY597512.1| Avena sativa leafy hull sterile 1 (LHS1) mRNA, partial cds
          Length = 904

 Score =  139 bits (70), Expect = 7e-033
 Identities = 103/114 (90%)
 Strand = Plus / Minus

                                                                        
Query: 1057 ggagaagacgatgacggcgacctcggcgtcgcagaggacggagatctcgtgcgccttctt 1116
            |||||||| ||||| |||| |||||||||||||||| |  |||| ||||| |||||||||
Sbjct: 117  ggagaagatgatgagggcgtcctcggcgtcgcagagcagcgagagctcgtacgccttctt 58

                                                                  
Query: 1117 cagcagcccgttccggcgcttggagaaggtcacctgccggtttatcttgttctc 1170
             |||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 57   gagcagcccgttccggcgcttggcgaaggtcacctgccggcttatcttgttctc 4



>gb|CN815876.1|CN815876 HRO4511_E01_J01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4511_E01_J01, mRNA sequence
          Length = 382

 Score = 38.2 bits (19), Expect = 0.019
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 460 aggaggaggcagctgctgc 478
           |||||||||||||||||||
Sbjct: 186 aggaggaggcagctgctgc 204



>gb|CN815646.1|CN815646 HRO4513_H12_O23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4513_H12_O23, mRNA sequence
          Length = 362

 Score = 36.2 bits (18), Expect = 0.074
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1069 gacggcgacctcggcgtc 1086
            ||||||||||||||||||
Sbjct: 36   gacggcgacctcggcgtc 53



>gb|CN821571.1|CN821571 HRO4426_G12_M24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4426_G12_M24, mRNA
           sequence
          Length = 468

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 578 atgaaggaagaagacga 594
           |||||||||||||||||
Sbjct: 320 atgaaggaagaagacga 336



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3863
Number of Sequences: 8143
Number of extensions: 3863
Number of successful extensions: 991
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 4
length of query: 1272
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1256
effective length of database: 4,572,175
effective search space: 5742651800
effective search space used: 5742651800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)