BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3713139.2.1
         (487 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816459.1|CN816459  HRO4521_A01_A01ZS5 Lib AA071E1X Aven...    84   1e-016
gb|CN819708.1|CN819708  HRO4403_C01_F01ZS5 Lib AA069E1X Aven...    32   0.43 
gb|CN819859.1|CN819859  HRO4404_H07_P14ZS5 Lib AA069E1X Aven...    32   0.43 

>gb|CN816459.1|CN816459 HRO4521_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4521_A01_A01, mRNA sequence
          Length = 435

 Score = 83.8 bits (42), Expect = 1e-016
 Identities = 158/197 (80%)
 Strand = Plus / Minus

                                                                       
Query: 262 gcgacggctggcatgtccttgagccaatcgtcgagcggcttgccgatagcgtagacgacg 321
           ||||| || |||||||||||||||||  | |||||||||| |||||| | |||| ||| |
Sbjct: 204 gcgacagcgggcatgtccttgagccacgcatcgagcggctcgccgatggagtagccgatg 145

                                                                       
Query: 322 aagccgatctcccggagcttggcggngtcgacgacgttgcggccgtcgaagatgaaggct 381
           ||||| ||||||| ||||||  | |  || || |||||||| || || ||||  ||||| 
Sbjct: 144 aagccaatctccctgagcttctcagcatcaacaacgttgcgcccatcaaagacaaaggcg 85

                                                                       
Query: 382 ggcttgtgcatggcgtcgaacatgcgcttgtagtcgagcgtcctgaattcgtcccactcg 441
           ||||| ||||||  |||||| ||   || |||||| ||| || |||| || |||||||||
Sbjct: 84  ggcttctgcatgttgtcgaagatcttctggtagtccagcttcttgaactcctcccactcg 25

                            
Query: 442 gcgaggatgcagacggc 458
           | |||||||||||||||
Sbjct: 24  gtgaggatgcagacggc 8



>gb|CN819708.1|CN819708 HRO4403_C01_F01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4403_C01_F01, mRNA
           sequence
          Length = 674

 Score = 32.2 bits (16), Expect = 0.43
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 141 cagggaaacctaattaatat 160
           ||||| ||||||||||||||
Sbjct: 569 cagggtaacctaattaatat 550



>gb|CN819859.1|CN819859 HRO4404_H07_P14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4404_H07_P14, mRNA
           sequence
          Length = 467

 Score = 32.2 bits (16), Expect = 0.43
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 141 cagggaaacctaattaatat 160
           ||||| ||||||||||||||
Sbjct: 341 cagggtaacctaattaatat 322



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 917
Number of Sequences: 8143
Number of extensions: 917
Number of successful extensions: 228
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 3
length of query: 487
length of database: 4,702,463
effective HSP length: 16
effective length of query: 471
effective length of database: 4,572,175
effective search space: 2153494425
effective search space used: 2153494425
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)