BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713091.2.1
(1013 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA ... 145 9e-035
gb|BE439340.1|BE439340 CDO1510_WHE05H09F ITEC CDO Oat cDNA ... 34 0.23
gb|CN814995.1|CN814995 HRO4504_G02_N04ZS5 Lib AA071E1X Aven... 34 0.23
gb|CN817025.1|CN817025 HRO4527_D09_H17ZS5 Lib AA071E1X Aven... 34 0.23
gb|CN819673.1|CN819673 HRO4402_H01_O02ZS5 Lib AA069E1X Aven... 34 0.23
>gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1510_WHE05H09, mRNA sequence
Length = 237
Score = 145 bits (73), Expect = 9e-035
Identities = 139/161 (86%)
Strand = Plus / Plus
Query: 127 ctcggcctgcaggtgagcccgttcgtgctccgcgtgtgcttggcgctgaacatgaaagga 186
|||||||| | ||||||||| || ||||||||||| || |||||||| | ||||| ||
Sbjct: 41 ctcggccttctggtgagcccatttgtgctccgcgtccgcatggcgctgcagatgaagggt 100
Query: 187 gtgagttacgagtacgtcgaggaggacatatccaacaagagtgagctcctgctcaagtcc 246
||||| ||||||||| ||||| ||||||| | ||||| | |||||||| ||||||| |
Sbjct: 101 gtgagctacgagtacatcgagcaggacatcctcgacaagggcgagctcctcctcaagtac 160
Query: 247 aacccggtgcacaagaaggtgcccgtgctcatccacaacgg 287
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aacccggtgcacaagaaggtgcccgtgctcatccacaacgg 201
>gb|BE439340.1|BE439340 CDO1510_WHE05H09F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1510_WHE05H09, mRNA sequence
Length = 253
Score = 34.2 bits (17), Expect = 0.23
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 612 tggttcgaggcggtgcgcagg 632
|||||||||||| ||||||||
Sbjct: 244 tggttcgaggcgctgcgcagg 224
>gb|CN814995.1|CN814995 HRO4504_G02_N04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_G02_N04, mRNA sequence
Length = 608
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 914 tgtcatcaaatattgtg 930
|||||||||||||||||
Sbjct: 140 tgtcatcaaatattgtg 124
>gb|CN817025.1|CN817025 HRO4527_D09_H17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_D09_H17, mRNA sequence
Length = 770
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 880 atgttcaaagcttatat 896
|||||||||||||||||
Sbjct: 657 atgttcaaagcttatat 641
>gb|CN819673.1|CN819673 HRO4402_H01_O02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_H01_O02, mRNA
sequence
Length = 779
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 832 ggaaaaaggtaaatggt 848
|||||||||||||||||
Sbjct: 222 ggaaaaaggtaaatggt 238
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2333
Number of Sequences: 8143
Number of extensions: 2333
Number of successful extensions: 608
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 6
length of query: 1013
length of database: 4,702,463
effective HSP length: 16
effective length of query: 997
effective length of database: 4,572,175
effective search space: 4558458475
effective search space used: 4558458475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)