BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712941.2.1
(1473 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820072.1|CN820072 HRO4410_G07_M14ZS5 Lib AA069E1X Aven... 309 4e-084
gb|CN818277.1|CN818277 HRO4470_C12_F24ZS5 Lib AA070E1X Aven... 246 5e-065
gb|CN816332.1|CN816332 HRO4519_E08_J15ZS5 Lib AA071E1X Aven... 137 3e-032
gb|CN820119.1|CN820119 HRO4411_C12_F23ZS5 Lib AA069E1X Aven... 94 4e-019
gb|CN816964.1|CN816964 HRO4526_G06_M12ZS5 Lib AA071E1X Aven... 38 0.022
gb|CN820210.1|CN820210 HRO4412_F03_L06ZS5 Lib AA069E1X Aven... 38 0.022
gb|CN820586.1|CN820586 HRO4415_B06_D11ZS5 Lib AA069E1X Aven... 38 0.022
emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll ... 34 0.34
>gb|CN820072.1|CN820072 HRO4410_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G07_M14, mRNA
sequence
Length = 798
Score = 309 bits (156), Expect = 4e-084
Identities = 453/552 (82%)
Strand = Plus / Plus
Query: 420 ggtacttatcttgagcatgacattgctcaccacacatccggtgatcaccagaagctttta 479
|||||||||||||||||||||||| | | || ||| ||| ||||| |||||| | |||
Sbjct: 35 ggtacttatcttgagcatgacattagttatcaaacaagcggcgatcatcagaagatctta 94
Query: 480 cttgcatatatggggattccacgctatgaaggtcccgaggttgatcctacaattgtgaca 539
|| || ||| | || ||||||||||||||||| || ||||||||||| || || ||||||
Sbjct: 95 ctagcctatctcggcattccacgctatgaagggcctgaggttgatcccactatagtgaca 154
Query: 540 catgatgcaaaggatttgtacaaagctggtgagaaaaggctgggtacggacgagaagatt 599
|||||||||||||| ||||||||||||||||||| | | | || || || ||||| |
Sbjct: 155 catgatgcaaaggacctgtacaaagctggtgagaagaagttcggcacagatgagaaaacc 214
Query: 600 tttatccgtgttttcactgaacgcagttgggcacacttggcatctgtttcttctgcttac 659
|| |||||| | |||||||||||||| ||||||||| ||||| ||||| |||||||||||
Sbjct: 215 ttcatccgtatcttcactgaacgcagctgggcacacatggcagctgttgcttctgcttac 274
Query: 660 catcatatgtatgaccggaaattagagaaggttatcaagagcgaaacttctggaaacttt 719
|| || |||| ||| ||| |||| ||||||| | ||||| ||||| |||||||| |||
Sbjct: 275 caccacatgtttgatcggtcgttagtgaaggttgtgaagagtgaaacatctggaaatttt 334
Query: 720 gaatttgcacttttgactatcctcagatgcgcggaaaacccagcaaagtattttgctaag 779
||| ||||||| | |||||||||||||| || || || ||||| |||||||||||||||
Sbjct: 335 gaagttgcactggtaactatcctcagatgtgctgagaatccagcgaagtattttgctaag 394
Query: 780 ctcttacgaaaggccatgaaaggtttaggcactgatgacatgacacttataagggtggtg 839
| ||| | || ||||||||||| | || ||||| |||| ||||||| |||||||||||
Sbjct: 395 gtgttaaggaaatccatgaaaggtcttggtactgacgacaagacacttgtaagggtggtg 454
Query: 840 gtgacgaggaccgagattgacatgcaatatatcaaggcagagtacttgaagaagtataag 899
|| || || ||||||||||| |||||||| || ||||||||||||| ||||| || ||
Sbjct: 455 gtaaccagaaccgagattgatatgcaatacataaaggcagagtactacaagaaatacaaa 514
Query: 900 aagccattagctgaggctatcaactccgagacatcaggaaactatcggacgttccttctt 959
||||| ||||||| |||||| | ||||| ||||| || |||||||||||||| ||
Sbjct: 515 aagccgctagctgatgctatccattccgaaacatcggggggttatcggacgttcctgctc 574
Query: 960 tcacttgttggt 971
|| |||||||||
Sbjct: 575 tcgcttgttggt 586
>gb|CN818277.1|CN818277 HRO4470_C12_F24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_C12_F24, mRNA sequence
Length = 620
Score = 246 bits (124), Expect = 5e-065
Identities = 374/456 (82%), Gaps = 1/456 (0%)
Strand = Plus / Plus
Query: 517 aggttgatcctacaattgtgacacatg-atgcaaaggatttgtacaaagctggtgagaaa 575
|||||||||| || || |||||||||| |||||||||| |||||||||||||||||||
Sbjct: 25 aggttgatcccactatagtgacacatgtatgcaaaggacctgtacaaagctggtgagaag 84
Query: 576 aggctgggtacggacgagaagatttttatccgtgttttcactgaacgcagttgggcacac 635
| | | || || || ||||| | || |||||| | |||||||||||||| |||||||||
Sbjct: 85 aagttcggcacagatgagaaaaccttcatccgtatcttcactgaacgcagctgggcacac 144
Query: 636 ttggcatctgtttcttctgcttaccatcatatgtatgaccggaaattagagaaggttatc 695
||||| ||||| ||||||||||||| || |||| ||| ||| |||| ||||||| |
Sbjct: 145 atggcagctgttgcttctgcttaccaccacatgtttgatcggtcgttagtgaaggttgtg 204
Query: 696 aagagcgaaacttctggaaactttgaatttgcacttttgactatcctcagatgcgcggaa 755
||||| ||||| |||||||| |||||| ||||||| | |||||||||||||| || ||
Sbjct: 205 aagagtgaaacatctggaaattttgaagttgcactggtaactatcctcagatgtgctgag 264
Query: 756 aacccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactgat 815
|| ||||| ||||||||||||||| | ||| | || ||||||||||| | || |||||
Sbjct: 265 aatccagcgaagtattttgctaaggtgttaaggaaatccatgaaaggtcttggtactgac 324
Query: 816 gacatgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaag 875
|||| ||||||| ||||||||||||| || || ||||||||||| |||||||| || |||
Sbjct: 325 gacaagacacttgtaagggtggtggtaaccagaaccgagattgatatgcaatacataaag 384
Query: 876 gcagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagacatca 935
|||||||||| ||||| || || ||||| ||||||| |||||| | ||||| |||||
Sbjct: 385 gcagagtactacaagaaatacaaaaagccgctagctgatgctatccattccgaaacatcg 444
Query: 936 ggaaactatcggacgttccttctttcacttgttggt 971
|| |||||||||||||| || || |||||||||
Sbjct: 445 gggggttatcggacgttcctgctctcgcttgttggt 480
>gb|CN816332.1|CN816332 HRO4519_E08_J15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_E08_J15, mRNA sequence
Length = 546
Score = 137 bits (69), Expect = 3e-032
Identities = 177/213 (83%)
Strand = Plus / Plus
Query: 759 ccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactgatgac 818
||||| ||||||||||||||| | ||| | || ||||||||||| | || |||||||||
Sbjct: 12 ccagcgaagtattttgctaaggtgttaaggaaatccatgaaaggtcttggtactgatgac 71
Query: 819 atgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaaggca 878
| ||| ||||||||||||||||| || || ||||||||||| |||||||| || ||||||
Sbjct: 72 aagactcttataagggtggtggtaaccagaaccgagattgatatgcaatacataaaggca 131
Query: 879 gagtacttgaagaagtataagaagccattagctgaggctatcaactccgagacatcagga 938
||||||| ||||| || || ||||| ||||||| |||||| | ||||| ||||| |||
Sbjct: 132 gagtactacaagaaatacaaaaagccgctagctgatgctatccattccgaaacatcggga 191
Query: 939 aactatcggacgttccttctttcacttgttggt 971
|||||||||||||| || || |||||||||
Sbjct: 192 ggttatcggacgttcctgctctcgcttgttggt 224
>gb|CN820119.1|CN820119 HRO4411_C12_F23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_C12_F23, mRNA
sequence
Length = 480
Score = 93.7 bits (47), Expect = 4e-019
Identities = 125/151 (82%)
Strand = Plus / Plus
Query: 821 gacacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaaggcaga 880
||||||| ||||||||||||| || || ||||||||||| |||||||| || ||||||||
Sbjct: 12 gacacttgtaagggtggtggtaaccagaaccgagattgatatgcaatacataaaggcaga 71
Query: 881 gtacttgaagaagtataagaagccattagctgaggctatcaactccgagacatcaggaaa 940
||||| ||||| || || ||||| ||||||| |||||| | ||||| ||||| ||
Sbjct: 72 gtactacaagaaatacaaaaagccgctagctgatgctatccattccgaaacatcgggggg 131
Query: 941 ctatcggacgttccttctttcacttgttggt 971
|||||||||||||| || || |||||||||
Sbjct: 132 ttatcggacgttcctgctctcgcttgttggt 162
>gb|CN816964.1|CN816964 HRO4526_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G06_M12, mRNA sequence
Length = 592
Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 635 cttggcatctgtttcttct 653
|||||||||||||||||||
Sbjct: 176 cttggcatctgtttcttct 158
>gb|CN820210.1|CN820210 HRO4412_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_F03_L06, mRNA
sequence
Length = 794
Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 635 cttggcatctgtttcttct 653
|||||||||||||||||||
Sbjct: 577 cttggcatctgtttcttct 559
>gb|CN820586.1|CN820586 HRO4415_B06_D11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_B06_D11, mRNA
sequence
Length = 442
Score = 38.2 bits (19), Expect = 0.022
Identities = 79/99 (79%)
Strand = Plus / Plus
Query: 873 aaggcagagtacttgaagaagtataagaagccattagctgaggctatcaactccgagaca 932
||||| ||||||| ||||| || || ||||| ||||||| |||||| | ||||| |||
Sbjct: 26 aaggctgagtactacaagaaatacaaaaagccgctagctgatgctatccattccgaaaca 85
Query: 933 tcaggaaactatcggacgttccttctttcacttgttggt 971
|| || |||||||||||||| || || |||||||||
Sbjct: 86 tcggggggttatcggacgttcctgctctcgcttgttggt 124
>emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synthase (chlG gene)
Length = 1428
Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 44 accctgccgccggcgcc 60
|||||||||||||||||
Sbjct: 208 accctgccgccggcgcc 192
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3898
Number of Sequences: 8143
Number of extensions: 3898
Number of successful extensions: 1000
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 977
Number of HSP's gapped (non-prelim): 19
length of query: 1473
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1456
effective length of database: 4,564,032
effective search space: 6645230592
effective search space used: 6645230592
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)