BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665490.2.1
(1289 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidas... 48 2e-005
gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidas... 48 2e-005
gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Aven... 42 0.001
emb|X79993.1|ASMAP1 A.sativa Asmap1 mRNA 38 0.019
gb|CN816128.1|CN816128 HRO4517_C09_E17ZS5 Lib AA071E1X Aven... 36 0.075
gb|CN818916.1|CN818916 HRO4473_A05_XXXZS5 Lib AA070E1X Aven... 36 0.075
gb|BE439333.1|BE439333 CDO1312_WHE05E12F ITEC CDO Oat cDNA ... 34 0.30
gb|CN814896.1|CN814896 HRO4503_F10_L19ZS5 Lib AA071E1X Aven... 34 0.30
gb|CN815311.1|CN815311 HRO4508_C08_F16ZS5 Lib AA071E1X Aven... 34 0.30
>gb|AF078871.1|AF078871 Avena sativa cultivar Ogle peroxidase PXC2 precursor (pxc2) gene,
complete cds
Length = 1191
Score = 48.1 bits (24), Expect = 2e-005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 997 aagcagtcgtggaagtggagccggatcagcgccgcg 1032
||||||||||||||||| ||||||| ||||| ||||
Sbjct: 206 aagcagtcgtggaagtgcagccggagcagcgacgcg 171
>gb|AF078872.1|AF078872 Avena sativa cultivar Ogle peroxidase PXC6 precursor (pxc6) gene,
complete cds
Length = 1197
Score = 48.1 bits (24), Expect = 2e-005
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 997 aagcagtcgtggaagtggagccggatcagcgccgcg 1032
||||||||||||||||| ||||||| ||||| ||||
Sbjct: 206 aagcagtcgtggaagtgcagccggagcagcgacgcg 171
>gb|CN816630.1|CN816630 HRO4523_A06_B11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_A06_B11, mRNA sequence
Length = 737
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 453 gttgtcgaaggcgttgggcgt 473
|||||||||||||||||||||
Sbjct: 308 gttgtcgaaggcgttgggcgt 288
>emb|X79993.1|ASMAP1 A.sativa Asmap1 mRNA
Length = 1520
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 451 ttgttgtcgaaggcgttgg 469
|||||||||||||||||||
Sbjct: 390 ttgttgtcgaaggcgttgg 372
>gb|CN816128.1|CN816128 HRO4517_C09_E17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_C09_E17, mRNA sequence
Length = 385
Score = 36.2 bits (18), Expect = 0.075
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 170 cggcggcgtccgcgacgg 187
||||||||||||||||||
Sbjct: 65 cggcggcgtccgcgacgg 82
>gb|CN818916.1|CN818916 HRO4473_A05_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_A05_XXX, mRNA sequence
Length = 510
Score = 36.2 bits (18), Expect = 0.075
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 170 cggcggcgtccgcgacgg 187
||||||||||||||||||
Sbjct: 167 cggcggcgtccgcgacgg 184
>gb|BE439333.1|BE439333 CDO1312_WHE05E12F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1312_WHE05E12, mRNA sequence
Length = 465
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 413 tgaagaggccctcccgg 429
|||||||||||||||||
Sbjct: 179 tgaagaggccctcccgg 163
>gb|CN814896.1|CN814896 HRO4503_F10_L19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_F10_L19, mRNA sequence
Length = 387
Score = 34.2 bits (17), Expect = 0.30
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 756 gcgcctgcccagtggca 772
|||||||||||||||||
Sbjct: 107 gcgcctgcccagtggca 123
>gb|CN815311.1|CN815311 HRO4508_C08_F16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_C08_F16, mRNA sequence
Length = 582
Score = 34.2 bits (17), Expect = 0.30
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 922 ttgggcggcgactgctgctcg 942
|||||||||||||| ||||||
Sbjct: 51 ttgggcggcgactggtgctcg 31
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2603
Number of Sequences: 8143
Number of extensions: 2603
Number of successful extensions: 624
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 9
length of query: 1289
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1273
effective length of database: 4,572,175
effective search space: 5820378775
effective search space used: 5820378775
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)