BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665414.2.1
(3330 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocoty... 1336 0.0
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 1265 0.0
gb|CN820184.1|CN820184 HRO4412_B04_D08ZS5 Lib AA069E1X Aven... 305 1e-082
gb|CN819189.1|CN819189 HRO4451_B10_C19ZS5 Lib AA070E1X Aven... 58 5e-008
gb|CN820364.1|CN820364 HRO4418_E06_I12ZS5 Lib AA069E1X Aven... 58 5e-008
gb|CN820901.1|CN820901 HRO4421_C03_E05ZS5 Lib AA069E1X Aven... 40 0.012
gb|CN815670.1|CN815670 HRO4514_C03_E06ZS5 Lib AA071E1X Aven... 36 0.19
gb|CN819442.1|CN819442 HRO4406_G01_M02ZS5 Lib AA069E1X Aven... 36 0.19
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
Length = 3422
Score = 1336 bits (674), Expect = 0.0
Identities = 1467/1730 (84%), Gaps = 6/1730 (0%)
Strand = Plus / Plus
Query: 1318 ggcaagagaagctccgaaactggatcccgtcgtaactcacatagtggaatgagaaactct 1377
|||||||||||||| |||| |||||| || ||||||||| | |||| |||| |||
Sbjct: 1277 ggcaagagaagctcagaaagtggatctcgacgtaactcaaaatctggagcaagaacctca 1336
Query: 1378 ctacaaaaaatcagtgaggtgcctgaaggagggaataagaccaggaaatctggtttgcgt 1437
|| ||||| ||||| || || |||||| |||| ||||| | || ||||||||| || |
Sbjct: 1337 ctgcaaaagatcagcgaagtacctgaaagaggcaataaaagtagaaaatctggtctgtat 1396
Query: 1438 tcttttatgggccttattggtatgggacatgggaatgtagagaagaacattctaaaacca 1497
|| ||||| | | |||||||||| | ||| ||| |||| ||| |||| || ||||||
Sbjct: 1397 tcacttatgagtttacttggtatgggccctggaaatatagaaaaggacatgctgaaacca 1456
Query: 1498 ag---ggaagatcccctacttgatagcgatgatgagagaccagatagcttcgatgacgat 1554
|| ||||| || |||||||| || || ||||| ||||| || ||||| ||||| ||
Sbjct: 1457 agagatgaagacccgctacttgacagtgacgatgaaagacctgagagctttgatgatgag 1516
Query: 1555 ttcaggaagaaagaaatgagaaagggcatagatttggctaccacacttgaacgtattgaa 1614
| ||| |||||||||||||| ||| ||||| |||||||| |||||||||||||||||
Sbjct: 1517 ctaaggcggaaagaaatgagaaggggtatagacttggctactacacttgaacgtattgag 1576
Query: 1615 aagaattttgtcatcaccgacccgaggttaccagataatccaattatatttgcatcggat 1674
||||| |||||||| || ||||| || || ||||||||||| ||||||||||| || |||
Sbjct: 1577 aagaactttgtcattactgacccaagattgccagataatcccattatatttgcgtccgat 1636
Query: 1675 agctttttgcgtttgacagagtattgccgcgaagaaatattgggaagaaactgcaggttt 1734
|| || |||| |||||||| ||| |||| |||||||| |||||||||||||||||||||
Sbjct: 1637 agtttcttgcagttgacagaatatagccgtgaagaaattttgggaagaaactgcaggttt 1696
Query: 1735 cttcaaggacctgaaactgaccgtgggacagtaaagaagataagagatgccatagataac 1794
|| ||||| |||||||||||||| | |||||| | ||| || ||||||||||||||||||
Sbjct: 1697 ctccaaggtcctgaaactgaccgggcgacagtgaggaaaattagagatgccatagataac 1756
Query: 1795 caaacagaagttactgttcagctgataaattatacaaagagcggtaagaaattctggaac 1854
|||||||| || |||||||||||||| |||||||||||||| ||||| || |||||||||
Sbjct: 1757 caaacagaggtcactgttcagctgattaattatacaaagagtggtaaaaagttctggaac 1816
Query: 1855 ctctttcacttgcagcctatgcgtgatcagaagggtgatgttcaatacttcattggggtt 1914
||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||
Sbjct: 1817 ctctttcacttgcagcctatgcgtgatcagaagggagatgtccagtactttattggggtt 1876
Query: 1915 caattggatggaactgagcgtgttcgagaggctgctgcaaaagatggtgccatactggtt 1974
|| |||||||||||||||| ||||||||| ||||| | | ||| || | ||| ||| |
Sbjct: 1877 cagttggatggaactgagcatgttcgagatgctgccgagagagagggagtcatgctgatc 1936
Query: 1975 aagaaaactgcagacaatattgatgaggctgcaaaggagcttccggatgctaatttgaga 2034
|||||||||||||| |||||||||||||| ||||| || ||||| |||||||||||||||
Sbjct: 1937 aagaaaactgcagaaaatattgatgaggcggcaaaagaacttccagatgctaatttgaga 1996
Query: 2035 cctgaggatctatgggctaatcactcaaaaccagtcttgccaaagccacatatgaaggat 2094
|| |||||| | ||||| || ||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1997 ccagaggatttgtgggccaaccactcaaaagtagttttgccaaagccacatatgaaggat 2056
Query: 2095 actgcatcgtggagagccatccaaaaggttcttgagaacggtgaaagcattgatttgaaa 2154
||||||| ||| ||||||||||||| ||||||||| || |||| |||||||||||||
Sbjct: 2057 tctgcatcatggcgagccatccaaaaagttcttgagggtggagaaaacattgatttgaaa 2116
Query: 2155 catttcagaccagtaaggcctttaggatctggtgatactggcagtgtccacttggtggag 2214
|||||||| || |||| |||||| ||||||||||| ||||| || || ||||||||||||
Sbjct: 2117 catttcaggcctgtaaagcctttgggatctggtgacactggaagcgtgcacttggtggag 2176
Query: 2215 ttgcttggcacaggtgaatactttgccatgaaagctatggataaaagtgtcatgcttaac 2274
||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2177 ttgttaaacacaggtgaatactttgccatgaaagctatggataaaaatgtcatgcttaac 2236
Query: 2275 cgaaacaaggtccatagagctaccgctgaacgacaaatccttgatatgttggaccaccca 2334
|| || ||||| |||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 2237 cgcaataaggttcatagagctaacgctgaacgagaaatccttgatatgttggaccaccca 2296
Query: 2335 ttccttccgacattgtatgcatcatttcagacaaagacacatatatgtcttattgttgac 2394
|||||||| ||||| || || ||||||||||||||||||||||| ||||| ||| |||
Sbjct: 2297 ttccttccaacattatacgcgtcatttcagacaaagacacatatttgtctaattacagac 2356
Query: 2395 tattgtgctggtggggaactctttatgctccttgataggcaacctatgaaggttctgaag 2454
|| | |||| ||||| |||||| ||||||| ||||| |||||| | ||||||||| |
Sbjct: 2357 tactaccctggcggggagctctttctgctcctagatagacaacctctaaaggttctgcgg 2416
Query: 2455 gaggatgcggtcaggttctatgctgcagaagtggtcacagcacttgaatacctacattgc 2514
|| ||||| ||||||||||||||||| ||||| |||| |||||||||||| | ||||||
Sbjct: 2417 gaagatgccgtcaggttctatgctgctgaagttgtcattgcacttgaatacttgcattgc 2476
Query: 2515 caaggtataatctacagagacttaaagccagagaacattttacttcatagagatgggcac 2574
||||||||||||||| ||||||||||||||||||| || ||||||||||| || ||||||
Sbjct: 2477 caaggtataatctaccgagacttaaagccagagaatatcttacttcatagggacgggcac 2536
Query: 2575 atttcattgacagactttgatttgtcttgcttgacatcctgccgaccacaagtgtttctt 2634
|| || |||||||||||||||||||||||| ||||||| ||| |||| || || ||||||
Sbjct: 2537 atatccttgacagactttgatttgtcttgcctgacatcttgcagaccgcaggtctttctt 2596
Query: 2635 ccacacgatattgataagaagaaaaagaggaggaagagcaggagtaatcccatatttttt 2694
||| | || | ||| ||||||| |||||||| ||||||||| ||| ||||||||
Sbjct: 2597 ccagaaga---agctaataagaaaagtaggaggaaaagcaggagttcacccgtatttttt 2653
Query: 2695 gctgaaccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggag 2754
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 2654 gctgaacctatgcgagcatccaattcatttgttggtacagaggagtacattgcacctgag 2713
Query: 2755 attattaccggagctggccatacgagtgctgtagattggtgggcgctaggaattcttcta 2814
|| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 2714 atcattactggagctggccatacaagtgctgttgattggtgggcgctagggattcttctg 2773
Query: 2815 tatgagatgttatatggttatacacccttcagagggaaaacaagacaaaggacatttgct 2874
||||| ||||| |||||||| |||||||||||||| ||||| || ||||||||||| ||
Sbjct: 2774 tatgaaatgttgtatggttacacacccttcagaggtaaaaccaggcaaaggacattcgcc 2833
Query: 2875 aatattctgcacaaggatatcagatttcctgcgagcatacaggtgagcctggcggcaagg 2934
|| || || |||||||| ||||||||||| ||||| ||| ||||||||| | ||||||
Sbjct: 2834 aacatcctacacaaggacatcagatttcccgcgagtatatcggtgagcctcccagcaagg 2893
Query: 2935 cagctgatataccggttgctacaccgagaccctgcaaataggctaggttcctatgagggc 2994
|||||||||||| || |||||||| | || ||| | |||||||| || || ||||||||
Sbjct: 2894 cagctgatatacaggctgctacacagggatccttcgaataggctgggatcgtatgaggga 2953
Query: 2995 gctatggagatcaaacaacaccccttctttcgtggcataaactgggctct 3044
| | ||||| ||| | ||||| ||||| || ||||| |||||||||||
Sbjct: 2954 tcaaacgagataaaagagcacccattcttccgcggcatcaactgggctct 3003
Score = 549 bits (277), Expect = e-156
Identities = 487/557 (87%)
Strand = Plus / Plus
Query: 746 tcccccgggtgtcggaggagcttcgcgccgcgctctcagcgttccagcagaccttcgtcg 805
|||||||||| ||||||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct: 699 tcccccgggtctcggaggagctccgggccgcgctctccgcgttccagcagacgttcgtcg 758
Query: 806 tgtccgatgccacccgccctgaccaccccatcctctacgccagcgctggattcttcaaca 865
|||| || |||| |||||| | |||||| ||| | ||||||||||| || ||||||||||
Sbjct: 759 tgtcggacgccagccgccccggccacccaatcatgtacgccagcgccggcttcttcaaca 818
Query: 866 tgacgggctactcctccaatgaggtcgtcggaaggaactgccgcttccttcaaggttctg 925
|||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| || |
Sbjct: 819 tgaccggctacacctccaaggaggtcgtcggaaggaactgccgcttcctccaaggctccg 878
Query: 926 ggaccgaccccgtagagatttccaagatcagacaggctctcgcagctgggtcaaattact 985
| |||||||| | |||||| |||||||||| |||||||| |||| ||| ||||| ||||
Sbjct: 879 gcaccgacccggcggagattgccaagatcaggcaggctctagcagatggatcaaactact 938
Query: 986 gtggccgtatcctcaactacaagaaggatggcacaccattctggaacctcctaaccgttg 1045
| |||||| ||||||||||||||||||| |||||| | |||||||||||||| ||| |||
Sbjct: 939 gcggccgtgtcctcaactacaagaaggacggcacagcgttctggaacctcctcaccattg 998
Query: 1046 cccccataaaggatgaggatggcagggtcctcaagttcattgggatgcaagtggaagtaa 1105
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct: 999 cccccatcaaggatgaggaaggcagggtcctcaagttcatagggatgcaagtggaagtga 1058
Query: 1106 gtaagtacacggaaggtaacaaagatactgctcttcgtccaaatggattgccagagtcac 1165
|||||||||| ||||| ||||| ||||| ||| |||||||||| || ||||||||||||
Sbjct: 1059 gtaagtacactgaagggaacaaggataccgctgttcgtccaaacggcctgccagagtcac 1118
Query: 1166 tcatcaaatatgatgcaaggcagaaggatcatgctcgtagctcagtctcggagctcctac 1225
|||||||||||||||| |||||||||||||| || ||||||||||| |||||||| ||
Sbjct: 1119 tcatcaaatatgatgctaggcagaaggatcaggcccgtagctcagtgtcggagcttctgt 1178
Query: 1226 ttgccctgaaggatccacggtcattgtcagaatcaagaaacaataccttaaaaaggaaat 1285
| || | ||| |||||||||||||||||||||||| || | ||||| ||||| ||||
Sbjct: 1179 tggctatcaagaatccacggtcattgtcagaatcaactaatagcaccttcaaaagaaaat 1238
Query: 1286 cacaggaatcagcaggt 1302
|||||||||||| ||||
Sbjct: 1239 cacaggaatcagtaggt 1255
Score = 52.0 bits (26), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 604 gagtggggcctcgtcctccagaccgacgagcacaccggccgcccccaggg 653
|||||||||||||| ||||||||| ||||||| || ||| | ||||||||
Sbjct: 575 gagtggggcctcgtgctccagaccaacgagcagacgggcaggccccaggg 624
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 1265 bits (638), Expect = 0.0
Identities = 1318/1544 (85%), Gaps = 3/1544 (0%)
Strand = Plus / Plus
Query: 1501 gaagatcccctacttgatagcgatgatgagagaccagatagcttcgatgacgatttcagg 1560
||||| || |||||||| || |||||||| ||||| || || || ||||| || | |||
Sbjct: 1526 gaagacccgctacttgacagtgatgatgaaagacctgagagttttgatgatgagctaagg 1585
Query: 1561 aagaaagaaatgagaaagggcatagatttggctaccacacttgaacgtattgaaaagaat 1620
|||||||||||||| ||| ||||| |||||||| ||||||||||||||||| |||||
Sbjct: 1586 cggaaagaaatgagaaggggtatagacttggctactacacttgaacgtattgagaagaac 1645
Query: 1621 tttgtcatcaccgacccgaggttaccagataatccaattatatttgcatcggatagcttt 1680
|||||||| || ||||| ||||| ||||||||||| |||||||| || || ||||| ||
Sbjct: 1646 tttgtcattactgacccaaggttgccagataatcccattatattcgcgtccgatagtttc 1705
Query: 1681 ttgcgtttgacagagtattgccgcgaagaaatattgggaagaaactgcaggtttcttcaa 1740
|||| |||||||| ||| |||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 1706 ttgcagttgacagaatatagccgtgaagaaattttgggaagaaactgcaggtttctacaa 1765
Query: 1741 ggacctgaaactgaccgtgggacagtaaagaagataagagatgccatagataaccaaaca 1800
|| ||||||||||| || | |||||| | || || ||||||||||||||||||||||||
Sbjct: 1766 ggtcctgaaactgatcgcgcgacagtgagaaaaattagagatgccatagataaccaaaca 1825
Query: 1801 gaagttactgttcagctgataaattatacaaagagcggtaagaaattctggaacctcttt 1860
|| || |||||||||||||| |||||||||||||| ||||| || |||||||||||||||
Sbjct: 1826 gaggtcactgttcagctgattaattatacaaagagtggtaaaaagttctggaacctcttt 1885
Query: 1861 cacttgcagcctatgcgtgatcagaagggtgatgttcaatacttcattggggttcaattg 1920
||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||
Sbjct: 1886 cacttgcagcctatgcgagatcagaagggagatgtccagtactttattggggttcagttg 1945
Query: 1921 gatggaactgagcgtgttcgagaggctgctgcaaaagatggtgccatactggttaagaaa 1980
||||||||||||| ||| ||||| ||||| | | ||| || | ||| ||| ||||||||
Sbjct: 1946 gatggaactgagcatgtccgagatgctgccgagagagagggagtcatgctgattaagaaa 2005
Query: 1981 actgcagacaatattgatgaggctgcaaaggagcttccggatgctaatttgagacctgag 2040
|||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 2006 actgcagaaaatattgatgaggcggcaaaagaacttccagatgctaatttgagaccagag 2065
Query: 2041 gatctatgggctaatcactcaaaaccagtcttgccaaagccacatatgaaggatactgca 2100
||| | |||||||| ||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct: 2066 gatttgtgggctaaccactcaaaagtagttttgccaaagccacatatgaaggattctgca 2125
Query: 2101 tcgtggagagccatccaaaaggttcttgagaacggtgaaagcattgatttgaaacatttc 2160
|| ||||||||||||||||| ||||||||| || |||| |||||||||||| ||||||
Sbjct: 2126 tcatggagagccatccaaaaagttcttgagggtggagaaaacattgatttgaagcatttc 2185
Query: 2161 agaccagtaaggcctttaggatctggtgatactggcagtgtccacttggtggagttgctt 2220
|| || |||| |||||| ||||||||||| ||||| || || |||||||||||||| |
Sbjct: 2186 aggcctgtaaagcctttgggatctggtgacactggaagcgtgcacttggtggagttatta 2245
Query: 2221 ggcacaggtgaatactttgccatgaaagctatggataaaagtgtcatgcttaaccgaaac 2280
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 2246 aacacaggtgaatactttgccatgaaagctatggataaaaacgtcatgcttaaccgcaat 2305
Query: 2281 aaggtccatagagctaccgctgaacgacaaatccttgatatgttggaccacccattcctt 2340
||||| |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 2306 aaggttcatagagctaacgctgaacgagaaatccttgatatgttggatcacccattcctt 2365
Query: 2341 ccgacattgtatgcatcatttcagacaaagacacatatatgtcttattgttgactattgt 2400
|||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||| |
Sbjct: 2366 ccgacattatatgcgtcatttcagacaaagacacatatatgtctcattacagactactac 2425
Query: 2401 gctggtggggaactctttatgctccttgataggcaacctatgaaggttctgaaggaggat 2460
|||| ||||| |||||| ||||||| ||||| |||||| | ||||||||| ||| |||
Sbjct: 2426 cctggcggggagctctttctgctcctagatagacaacctctaaaggttctgcgggaagat 2485
Query: 2461 gcggtcaggttctatgctgcagaagtggtcacagcacttgaatacctacattgccaaggt 2520
|| ||||||||||||||||| ||||| |||| |||||||||||| | |||||||||||
Sbjct: 2486 gccgtcaggttctatgctgctgaagttgtcattgcacttgaatacttgcattgccaagga 2545
Query: 2521 ataatctacagagacttaaagccagagaacattttacttcatagagatgggcacatttca 2580
||||||||| ||||||| ||||||||||| || |||||||| || || |||||||| ||
Sbjct: 2546 ataatctaccgagacttgaagccagagaatatcttacttcacagggacgggcacatctcc 2605
Query: 2581 ttgacagactttgatttgtcttgcttgacatcctgccgaccacaagtgtttcttccacac 2640
||||||||||||||||||||||| ||||||| ||| |||| || || ||||||||| |
Sbjct: 2606 ttgacagactttgatttgtcttgtctgacatcttgcagaccgcaggtctttcttccagaa 2665
Query: 2641 gatattgataagaagaaaaagaggaggaagagcaggagtaatcccatattttttgctgaa 2700
|| | ||| ||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct: 2666 ga---agctaataagaaaagtaggaggaaaagcaggagttcacccatattttttgctgaa 2722
Query: 2701 ccaatgcgagcatcaaattcttttgttggtacagaggagtacattgcaccggagattatt 2760
|| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct: 2723 cctatgcgagcatccaattcatttgttggtacagaggagtacattgcacctgagatcatt 2782
Query: 2761 accggagctggccatacgagtgctgtagattggtgggcgctaggaattcttctatatgag 2820
|| |||||||||||||| |||||||| ||||||||||||||||| || || || |||||
Sbjct: 2783 actggagctggccatacaagtgctgttgattggtgggcgctagggatcctcctgtatgaa 2842
Query: 2821 atgttatatggttatacacccttcagagggaaaacaagacaaaggacatttgctaatatt 2880
||||| |||||||| |||||||||||||| ||||| || || |||||||| || || ||
Sbjct: 2843 atgttgtatggttacacacccttcagaggtaaaaccaggcagaggacattcgccaacatc 2902
Query: 2881 ctgcacaaggatatcagatttcctgcgagcatacaggtgagcctggcggcaaggcagctg 2940
|| |||||||| ||||||||||| ||||| ||| ||||||||| | ||||||||||||
Sbjct: 2903 ctacacaaggacatcagatttcccgcgagtatatcggtgagcctcccagcaaggcagctg 2962
Query: 2941 atataccggttgctacaccgagaccctgcaaataggctaggttcctatgagggcgctatg 3000
||||| || |||||||| | || ||| | |||||||| || || || ||||| | |
Sbjct: 2963 atatataggctgctacacagggatccttcgaataggctgggatcgtacgagggatcaaac 3022
Query: 3001 gagatcaaacaacaccccttctttcgtggcataaactgggctct 3044
||||| ||| ||||||| ||||| || ||||| |||||||||||
Sbjct: 3023 gagataaaagaacaccctttcttccgcggcatcaactgggctct 3066
Score = 486 bits (245), Expect = e-137
Identities = 479/557 (85%)
Strand = Plus / Plus
Query: 746 tcccccgggtgtcggaggagcttcgcgccgcgctctcagcgttccagcagaccttcgtcg 805
|||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 762 tcccccgggtctcggaggagctccgggccgcgctctccgcgttccagcagaccttcgtcg 821
Query: 806 tgtccgatgccacccgccctgaccaccccatcctctacgccagcgctggattcttcaaca 865
|||| || |||| ||| || | |||||| ||| | ||||||||||| || ||||||||||
Sbjct: 822 tgtcggacgccagccgacccggccacccaatcatgtacgccagcgccggcttcttcaaca 881
Query: 866 tgacgggctactcctccaatgaggtcgtcggaaggaactgccgcttccttcaaggttctg 925
|||| |||||| | ||||| ||||||||||||||||||||||||||||| ||||| || |
Sbjct: 882 tgaccggctacacatccaaggaggtcgtcggaaggaactgccgcttcctccaaggctccg 941
Query: 926 ggaccgaccccgtagagatttccaagatcagacaggctctcgcagctgggtcaaattact 985
| |||||||| | |||||| |||||||||| |||||||| ||| ||| ||||| ||||
Sbjct: 942 gcaccgacccggcggagattgccaagatcaggcaggctctagcaaatggatcaaactact 1001
Query: 986 gtggccgtatcctcaactacaagaaggatggcacaccattctggaacctcctaaccgttg 1045
| |||||| ||||||||||||||||||| ||||| |||||||||||||| | ||| |||
Sbjct: 1002 gcggccgtgtcctcaactacaagaaggacggcaccgcattctggaacctcttgaccattg 1061
Query: 1046 cccccataaaggatgaggatggcagggtcctcaagttcattgggatgcaagtggaagtaa 1105
|||| || |||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 1062 ccccaatcaaggatgaagaaggcagggtcctcaagttcatagggatgcaagtggaagtaa 1121
Query: 1106 gtaagtacacggaaggtaacaaagatactgctcttcgtccaaatggattgccagagtcac 1165
|||| ||||| ||||| ||||| ||||| | | ||||||||||||| ||||||||||||
Sbjct: 1122 gtaaatacactgaagggaacaaggatacggttgttcgtccaaatggcctgccagagtcac 1181
Query: 1166 tcatcaaatatgatgcaaggcagaaggatcatgctcgtagctcagtctcggagctcctac 1225
|||||||||||||||| ||||| |||||||| || ||||||||||| || ||||| ||
Sbjct: 1182 tcatcaaatatgatgccaggcaaaaggatcaggcccgtagctcagtgtctgagcttctgt 1241
Query: 1226 ttgccctgaaggatccacggtcattgtcagaatcaagaaacaataccttaaaaaggaaat 1285
| || | ||| ||||||| |||||||||||||||| || | ||||| ||||| ||||
Sbjct: 1242 tggctatcaagaatccacgatcattgtcagaatcaactaatagcacctttaaaagaaaat 1301
Query: 1286 cacaggaatcagcaggt 1302
|||||||||||| ||||
Sbjct: 1302 cacaggaatcagtaggt 1318
Score = 52.0 bits (26), Expect = 3e-006
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 604 gagtggggcctcgtcctccagaccgacgagcacaccggccgcccccaggg 653
|||||||||||||| ||||||||| ||||||| || ||||| || |||||
Sbjct: 638 gagtggggcctcgtgctccagaccaacgagcagacgggccggccgcaggg 687
Score = 46.1 bits (23), Expect = 2e-004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1318 ggcaagagaagctccgaaactggatcccgtcgtaactca 1356
|||||||||||||| |||| |||||| || |||||||||
Sbjct: 1340 ggcaagagaagctcagaaagtggatctcgacgtaactca 1378
>gb|CN820184.1|CN820184 HRO4412_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B04_D08, mRNA
sequence
Length = 610
Score = 305 bits (154), Expect = 1e-082
Identities = 354/420 (84%), Gaps = 3/420 (0%)
Strand = Plus / Plus
Query: 2539 aagccagagaacattttacttcatagagatgggcacatttcattgacagactttgatttg 2598
||||||||||| || |||||||| || || |||||||| || || ||||||||||||
Sbjct: 5 aagccagagaatatcttacttcacagggacgggcacatctccttttttgactttgatttg 64
Query: 2599 tcttgcttgacatcctgccgaccacaagtgtttcttccacacgatattgataagaagaaa 2658
||||| ||||||| ||| |||| || || ||||||||| | || | ||| ||||||
Sbjct: 65 tcttgtctgacatcttgcagaccgcaggtctttcttccagaagaa---gctaataagaaa 121
Query: 2659 aagaggaggaagagcaggagtaatcccatattttttgctgaaccaatgcgagcatcaaat 2718
| |||||||| ||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct: 122 agtaggaggaaaagcaggagttcacccatattttttgctgaacctatgcgagcatccaat 181
Query: 2719 tcttttgttggtacagaggagtacattgcaccggagattattaccggagctggccatacg 2778
|| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 182 tcatttgttggtacagaggagtacattgcacctgagatcattactggagctggccataca 241
Query: 2779 agtgctgtagattggtgggcgctaggaattcttctatatgagatgttatatggttataca 2838
|||||||| ||||||||||||||||| || ||||| ||||| ||||| |||||||| |||
Sbjct: 242 agtgctgttgattggtgggcgctagggatccttctgtatgaaatgttgtatggttacaca 301
Query: 2839 cccttcagagggaaaacaagacaaaggacatttgctaatattctgcacaaggatatcaga 2898
||||||||||| ||||| || || |||||||| || || || || |||||||| ||||||
Sbjct: 302 cccttcagaggtaaaaccaggcagaggacattcgccaacatcctacacaaggacatcaga 361
Query: 2899 tttcctgcgagcatacaggtgagcctggcggcaaggcagctgatataccggttgctacac 2958
||||| ||||| ||| ||||||||| | ||||||||||||||||| || ||||||||
Sbjct: 362 tttcccgcgagtatatcggtgagcctcccagcaaggcagctgatatataggctgctacac 421
>gb|CN819189.1|CN819189 HRO4451_B10_C19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_B10_C19, mRNA sequence
Length = 791
Score = 58.0 bits (29), Expect = 5e-008
Identities = 98/121 (80%)
Strand = Plus / Plus
Query: 2711 catcaaattcttttgttggtacagaggagtacattgcaccggagattattaccggagctg 2770
|||||||||| |||||||| || || ||||||||||| || ||| | || || || || |
Sbjct: 28 catcaaattcgtttgttggaactgaagagtacattgctcctgaggtcatcacaggtgcag 87
Query: 2771 gccatacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgttatatg 2830
| ||||| ||||| | ||||||||||| || |||||||| | ||||||||||| ||||
Sbjct: 88 gacatacaagtgccattgattggtgggctcttggaattctgttgtatgagatgttgtatg 147
Query: 2831 g 2831
|
Sbjct: 148 g 148
>gb|CN820364.1|CN820364 HRO4418_E06_I12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_E06_I12, mRNA
sequence
Length = 699
Score = 58.0 bits (29), Expect = 5e-008
Identities = 98/121 (80%)
Strand = Plus / Plus
Query: 2711 catcaaattcttttgttggtacagaggagtacattgcaccggagattattaccggagctg 2770
|||||||||| |||||||| || || ||||||||||| || ||| | || || || || |
Sbjct: 37 catcaaattcgtttgttggaactgaagagtacattgctcccgaggtcatcacaggtgcag 96
Query: 2771 gccatacgagtgctgtagattggtgggcgctaggaattcttctatatgagatgttatatg 2830
| ||||| ||||| | ||||||||||| || |||||||| | ||||||||||| ||||
Sbjct: 97 gacatacaagtgccattgattggtgggctcttggaattctgttgtatgagatgttgtatg 156
Query: 2831 g 2831
|
Sbjct: 157 g 157
>gb|CN820901.1|CN820901 HRO4421_C03_E05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_C03_E05, mRNA
sequence
Length = 744
Score = 40.1 bits (20), Expect = 0.012
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 2179 ggatctggtgatactggcagtgtccacttggtggagttgc 2218
|||| |||||| ||||||||||| ||||| || |||||||
Sbjct: 84 ggatgtggtgacactggcagtgtacacttagttgagttgc 123
>gb|CN815670.1|CN815670 HRO4514_C03_E06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_C03_E06, mRNA sequence
Length = 390
Score = 36.2 bits (18), Expect = 0.19
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 313 ggagcagcagcagcagcc 330
||||||||||||||||||
Sbjct: 29 ggagcagcagcagcagcc 46
>gb|CN819442.1|CN819442 HRO4406_G01_M02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_G01_M02, mRNA
sequence
Length = 643
Score = 36.2 bits (18), Expect = 0.19
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 315 agcagcagcagcagccag 332
||||||||||||||||||
Sbjct: 53 agcagcagcagcagccag 36
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,225
Number of Sequences: 8143
Number of extensions: 10225
Number of successful extensions: 3451
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3393
Number of HSP's gapped (non-prelim): 41
length of query: 3330
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3313
effective length of database: 4,564,032
effective search space: 15120638016
effective search space used: 15120638016
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)