BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3478999.2.1
(825 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN815341.1|CN815341 HRO4508_F03_L06ZS5 Lib AA071E1X Aven... 34 0.19
gb|CN818746.1|CN818746 HRO4468_B11_C22ZS5 Lib AA070E1X Aven... 34 0.19
>gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B08_C16, mRNA
sequence
Length = 560
Score = 44.1 bits (22), Expect = 2e-004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctct 356
||||| ||||| || |||||| ||||||||||||||||
Sbjct: 95 tgcctggacatcctgaaggaccaatggagtcccgctct 132
>gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B09_D18, mRNA
sequence
Length = 540
Score = 44.1 bits (22), Expect = 2e-004
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 319 tgcctcgacattcttaaggacaaatggagtcccgctct 356
||||| ||||| || |||||| ||||||||||||||||
Sbjct: 91 tgcctggacatcctgaaggaccaatggagtcccgctct 128
>gb|CN815341.1|CN815341 HRO4508_F03_L06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_F03_L06, mRNA sequence
Length = 436
Score = 34.2 bits (17), Expect = 0.19
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 521 caagtgttgtttcagatgtga 541
|||||||||||||| ||||||
Sbjct: 372 caagtgttgtttcaaatgtga 392
>gb|CN818746.1|CN818746 HRO4468_B11_C22ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_B11_C22, mRNA sequence
Length = 745
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 218 agcttgagctattcttg 234
|||||||||||||||||
Sbjct: 418 agcttgagctattcttg 434
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2017
Number of Sequences: 8143
Number of extensions: 2017
Number of successful extensions: 493
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 4
length of query: 825
length of database: 4,702,463
effective HSP length: 16
effective length of query: 809
effective length of database: 4,572,175
effective search space: 3698889575
effective search space used: 3698889575
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)