BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3438088.2.1
(615 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Aven... 54 2e-007
gb|CN821143.1|CN821143 HRO4428_A02_B04ZS5 Lib AA069E1X Aven... 42 6e-004
gb|CN816903.1|CN816903 HRO4526_A11_A22ZS5 Lib AA071E1X Aven... 40 0.002
gb|CN819429.1|CN819429 HRO4405_H09_O17ZS5 Lib AA069E1X Aven... 38 0.009
gb|CN820338.1|CN820338 HRO4418_C03_E06ZS5 Lib AA069E1X Aven... 36 0.035
gb|CN821049.1|CN821049 HRO4422_H12_O24ZS5 Lib AA069E1X Aven... 34 0.14
>gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_F02_L03, mRNA
sequence
Length = 714
Score = 54.0 bits (27), Expect = 2e-007
Identities = 153/195 (78%)
Strand = Plus / Minus
Query: 410 atctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagg 469
||||||||| || ||||| | ||| |||||||||||||| || || | | | |||| ||
Sbjct: 499 atctttgaagccatcatgcctgtcagggccagcaaccattgccccgacgaggatatttgg 440
Query: 470 gtttggcttcttggcgtccctccacttccaccctcctttgcagccatagtgaacaccgtt 529
||||| ||| || | |||||||| || | ||||||||||| || ||||| ||||||||
Sbjct: 439 gtttgcctttttagactccctccatttgaaacctcctttgcatccgtagtggacaccgtt 380
Query: 530 cttagggatcgaggcgccccggtggtgaacatgcctggggtaacgctttccgaacccaac 589
| |||||| || || || | ||| |||||| || ||||||| |||||| | |||||
Sbjct: 379 atgagggattgatgcccctctgtgatgaacacgcttggggtacttctttccataaccaac 320
Query: 590 cacgtagctcatctt 604
||||||||||||||
Sbjct: 319 gacgtagctcatctt 305
>gb|CN821143.1|CN821143 HRO4428_A02_B04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_A02_B04, mRNA
sequence
Length = 636
Score = 42.1 bits (21), Expect = 6e-004
Identities = 102/129 (79%)
Strand = Plus / Minus
Query: 410 atctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattagg 469
||||||||| || ||||| | ||| |||||||||||||| || || | | | |||| ||
Sbjct: 256 atctttgaagccatcatgcctgtcagggccagcaaccattgctccgacgaggatatttgg 197
Query: 470 gtttggcttcttggcgtccctccacttccaccctcctttgcagccatagtgaacaccgtt 529
||||| ||| || | |||||||| || | ||||||||||| || ||||| ||||||||
Sbjct: 196 gtttgcctttttagactccctccatttgaaacctcctttgcatccgtagtggacaccgtt 137
Query: 530 cttagggat 538
| ||||||
Sbjct: 136 atgagggat 128
Score = 36.2 bits (18), Expect = 0.035
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 270 gggaacatgggcggtactgcagagaacatggtgttctt 307
|||||||| || || ||||| ||||| |||||||||||
Sbjct: 405 gggaacattgggggaactgctgagaagatggtgttctt 368
>gb|CN816903.1|CN816903 HRO4526_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_A11_A22, mRNA sequence
Length = 559
Score = 40.1 bits (20), Expect = 0.002
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 270 gggaacatgggcggtactgcagagaacatggtgttcttgtccac 313
|||||||| || || ||||| ||||| ||||||||||| |||||
Sbjct: 372 gggaacattgggggaactgctgagaagatggtgttcttatccac 415
Score = 38.2 bits (19), Expect = 0.009
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 410 atctttgaacccgtcatggcggtcggggccagcaaccat 448
||||||||| || ||||| | ||| ||||||||||||||
Sbjct: 521 atctttgaagccatcatgcctgtcagggccagcaaccat 559
>gb|CN819429.1|CN819429 HRO4405_H09_O17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_H09_O17, mRNA
sequence
Length = 698
Score = 38.2 bits (19), Expect = 0.009
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 410 atctttgaacccgtcatggcggtcggggccagcaaccat 448
||||||||| || ||||| | ||| ||||||||||||||
Sbjct: 103 atctttgaagccatcatgcctgtcagggccagcaaccat 65
>gb|CN820338.1|CN820338 HRO4418_C03_E06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_C03_E06, mRNA
sequence
Length = 431
Score = 36.2 bits (18), Expect = 0.035
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 270 gggaacatgggcggtactgcagagaacatggtgttctt 307
|||||||| || || ||||| ||||| |||||||||||
Sbjct: 67 gggaacattgggggaactgctgagaagatggtgttctt 30
>gb|CN821049.1|CN821049 HRO4422_H12_O24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H12_O24, mRNA
sequence
Length = 661
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 291 gagaacatggtgttctt 307
|||||||||||||||||
Sbjct: 56 gagaacatggtgttctt 72
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1526
Number of Sequences: 8143
Number of extensions: 1526
Number of successful extensions: 456
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 14
length of query: 615
length of database: 4,702,463
effective HSP length: 16
effective length of query: 599
effective length of database: 4,572,175
effective search space: 2738732825
effective search space used: 2738732825
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)