BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3345642.2.1
         (600 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815287.1|CN815287  HRO4508_A06_B12ZS5 Lib AA071E1X Aven...    36   0.034
gb|CN815958.1|CN815958  HRO4515_D01_H01ZS5 Lib AA071E1X Aven...    36   0.034
>gb|CN815287.1|CN815287 HRO4508_A06_B12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4508_A06_B12, mRNA sequence
          Length = 570

 Score = 36.2 bits (18), Expect = 0.034
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 361 cactataatggaaacatgaaaccctggctg 390
           ||||| || |||||||||||||| ||||||
Sbjct: 337 cactacaacggaaacatgaaaccatggctg 366
>gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_D01_H01, mRNA sequence
          Length = 653

 Score = 36.2 bits (18), Expect = 0.034
 Identities = 36/42 (85%)
 Strand = Plus / Plus

                                                     
Query: 349 gctgctgttgtgcactataatggaaacatgaaaccctggctg 390
           |||||||||||||| |  ||||| |||||||| || ||||||
Sbjct: 484 gctgctgttgtgcatttcaatggtaacatgaagccttggctg 525
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1732
Number of Sequences: 8143
Number of extensions: 1732
Number of successful extensions: 412
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 4
length of query: 600
length of database: 4,702,463
effective HSP length: 16
effective length of query: 584
effective length of database: 4,572,175
effective search space: 2670150200
effective search space used: 2670150200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)