BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230260.2.1
(863 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Aven... 137 2e-032
gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Aven... 101 1e-021
gb|CN818870.1|CN818870 HRO4456_A02_A04ZS5 Lib AA070E1X Aven... 36 0.050
gb|AY847064.1| Avena sativa Aux/IAA3 mRNA, partial cds 36 0.050
gb|CN816892.1|CN816892 HRO4525_H12_O23ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN819442.1|CN819442 HRO4406_G01_M02ZS5 Lib AA069E1X Aven... 34 0.20
gb|CN820015.1|CN820015 HRO4410_B01_C02ZS5 Lib AA069E1X Aven... 34 0.20
>gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D02_G03, mRNA
sequence
Length = 704
Score = 137 bits (69), Expect = 2e-032
Identities = 246/305 (80%)
Strand = Plus / Minus
Query: 555 tctcctttgatataactgaggaagactttaacacttgtatttactgcaggttgcaacaaa 614
|||||||| | |||||| |||| ||||||| || || ||||||| || |||| |||
Sbjct: 382 tctcctttaaaataactaaggaggactttactgctcgtgtttactgtagactgcagcaag 323
Query: 615 ggtccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataa 674
|| |||||||| ||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct: 322 gggccaattactaatgatgggcaaatagttacaatatccagtccagtttttgctgcataa 263
Query: 675 gcaaaagcctcatgttctgccaatgttttagaaaggaaataccattcctcattttttctg 734
|||||||||||| | ||||| | ||||| |||||| |||||| |||| ||| ||||||
Sbjct: 262 gcaaaagcctcacgctctgcaagcgttttggaaaggtcataccaatccttattctttctg 203
Query: 735 caatattccccatctgaccagctatcctcagtaaaggcctcgcccttaggccagtcagga 794
|| ||| | ||||||||| | || ||| ||| | | |||||||||||||| ||||
Sbjct: 202 cagaggtcctcgtctgaccagttgtcttcatccaagactttgcccttaggccagttagga 143
Query: 795 ttattgaacacagccgccactgaagataccacaacaactctcttcgctttggcctcatag 854
|||||| ||||||| | || ||||| ||||| ||||||| ||| |||| ||||| |||
Sbjct: 142 ttattgtacacagcagaaacagaagacaccacgacaactcgcttaacttttgcctcgtag 83
Query: 855 caagc 859
|||||
Sbjct: 82 caagc 78
Score = 52.0 bits (26), Expect = 8e-007
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| | |||| |||||| | |||||| |||||
Sbjct: 703 gctcagttcaggacgccagatgctctgtaggactcgacgctgtccctgagggtttcctct 644
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
|||||||| |||||||||| || ||| |||| |||||
Sbjct: 643 atgggcctgaaggtccaccccagtttctgaagtttctc 606
Score = 34.2 bits (17), Expect = 0.20
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatg 410
|||| ||| ||||||||| |||||||||||||
Sbjct: 559 taagggtacgttggatataaggtcttcagtatg 527
>gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G05_M10, mRNA
sequence
Length = 632
Score = 101 bits (51), Expect = 1e-021
Identities = 111/131 (84%)
Strand = Plus / Minus
Query: 555 tctcctttgatataactgaggaagactttaacacttgtatttactgcaggttgcaacaaa 614
|||||||| | |||||| |||| ||||||| || || ||||||| || |||| |||
Sbjct: 138 tctcctttaaaataactaaggaggactttactgctcgtgtttactgtagactgcagcaag 79
Query: 615 ggtccaattaccaatgatgggcaaatagttacaatgtctagcccagttttggctgcataa 674
|| |||||||| ||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct: 78 gggccaattactaatgatgggcaaatagttacaatatccagtccagtttttgctgcataa 19
Query: 675 gcaaaagcctc 685
|||||||||||
Sbjct: 18 gcaaaagcctc 8
Score = 52.0 bits (26), Expect = 8e-007
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 234 gctcagttcaggatgcccatagctctgtagcattcgatgctgtctcggagggtgtcctcc 293
||||||||||||| ||| ||||||||| | |||| |||||| | |||||| |||||
Sbjct: 459 gctcagttcaggacgccagatgctctgtaggactcgacgctgtccctgagggtttcctct 400
Query: 294 atgggcctagaggtccaccctagcttccgaagcttctc 331
|||||||| |||||||||| || ||| |||| |||||
Sbjct: 399 atgggcctgaaggtccaccccagtttctgaagtttctc 362
Score = 34.2 bits (17), Expect = 0.20
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 378 taagtgtatgttggatattcggtcttcagtatg 410
|||| ||| ||||||||| |||||||||||||
Sbjct: 315 taagggtacgttggatataaggtcttcagtatg 283
>gb|CN818870.1|CN818870 HRO4456_A02_A04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_A02_A04, mRNA sequence
Length = 547
Score = 36.2 bits (18), Expect = 0.050
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 197 agcagcagcagcagccaa 214
||||||||||||||||||
Sbjct: 499 agcagcagcagcagccaa 482
>gb|AY847064.1| Avena sativa Aux/IAA3 mRNA, partial cds
Length = 360
Score = 36.2 bits (18), Expect = 0.050
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 194 agtagcagcagcagcagc 211
||||||||||||||||||
Sbjct: 141 agtagcagcagcagcagc 124
Score = 34.2 bits (17), Expect = 0.20
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 191 agtagtagcagcagcagcagc 211
||||| |||||||||||||||
Sbjct: 141 agtagcagcagcagcagcagc 121
>gb|CN816892.1|CN816892 HRO4525_H12_O23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_H12_O23, mRNA sequence
Length = 468
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 197 agcagcagcagcagcca 213
|||||||||||||||||
Sbjct: 321 agcagcagcagcagcca 305
>gb|CN819442.1|CN819442 HRO4406_G01_M02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_G01_M02, mRNA
sequence
Length = 643
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 197 agcagcagcagcagcca 213
|||||||||||||||||
Sbjct: 53 agcagcagcagcagcca 37
>gb|CN820015.1|CN820015 HRO4410_B01_C02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B01_C02, mRNA
sequence
Length = 513
Score = 34.2 bits (17), Expect = 0.20
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 197 agcagcagcagcagccaaagc 217
||||||||||||| |||||||
Sbjct: 306 agcagcagcagcaaccaaagc 286
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2856
Number of Sequences: 8143
Number of extensions: 2856
Number of successful extensions: 872
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 21
length of query: 863
length of database: 4,702,463
effective HSP length: 16
effective length of query: 847
effective length of database: 4,572,175
effective search space: 3872632225
effective search space used: 3872632225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)