BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204486.2.1
(607 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814920.1|CN814920 HRO4503_H10_P19ZS5 Lib AA071E1X Aven... 46 4e-005
gb|CN817232.1|CN817232 HRO4464_D08_G16ZS5 Lib AA070E1X Aven... 38 0.009
gb|CN815279.1|CN815279 HRO4507_H08_P15ZS5 Lib AA071E1X Aven... 36 0.035
>gb|CN814920.1|CN814920 HRO4503_H10_P19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_H10_P19, mRNA sequence
Length = 536
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 193 tcgcgctcggcaactacctcagc 215
|||||||||||||||||||||||
Sbjct: 81 tcgcgctcggcaactacctcagc 103
>gb|CN817232.1|CN817232 HRO4464_D08_G16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_D08_G16, mRNA sequence
Length = 782
Score = 38.2 bits (19), Expect = 0.009
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 282 aacctcaaccgcggccacctcgactacttct 312
||||||||||| ||||| || ||||||||||
Sbjct: 399 aacctcaaccggggccatctagactacttct 429
>gb|CN815279.1|CN815279 HRO4507_H08_P15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_H08_P15, mRNA sequence
Length = 443
Score = 36.2 bits (18), Expect = 0.035
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 300 ctcgactacttcttctggctgctcgc 325
||||||||||||| |||| |||||||
Sbjct: 153 ctcgactacttctactggttgctcgc 178
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1507
Number of Sequences: 8143
Number of extensions: 1507
Number of successful extensions: 447
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 5
length of query: 607
length of database: 4,702,463
effective HSP length: 16
effective length of query: 591
effective length of database: 4,572,175
effective search space: 2702155425
effective search space used: 2702155425
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)