BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203888.2.1
(787 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439294.1|BE439294 CDO506_WHE04G12R ITEC CDO Oat cDNA L... 38 0.011
gb|BE439292.1|BE439292 CDO58_WHE04F10R ITEC CDO Oat cDNA Li... 36 0.045
gb|CN820284.1|CN820284 HRO4417_F05_K09ZS5 Lib AA069E1X Aven... 34 0.18
>gb|BE439294.1|BE439294 CDO506_WHE04G12R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO506_WHE04G12, mRNA sequence
Length = 167
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgca 781
|||||||||||||||||||
Sbjct: 19 ctcgtgccgaattcctgca 1
>gb|BE439292.1|BE439292 CDO58_WHE04F10R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO58_WHE04, mRNA sequence
Length = 220
Score = 36.2 bits (18), Expect = 0.045
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 763 ctcgtgccgaattcctgc 780
||||||||||||||||||
Sbjct: 18 ctcgtgccgaattcctgc 1
>gb|CN820284.1|CN820284 HRO4417_F05_K09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_F05_K09, mRNA
sequence
Length = 732
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 760 atgctcgtgccgaattc 776
|||||||||||||||||
Sbjct: 610 atgctcgtgccgaattc 626
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2350
Number of Sequences: 8143
Number of extensions: 2350
Number of successful extensions: 752
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 4
length of query: 787
length of database: 4,702,463
effective HSP length: 16
effective length of query: 771
effective length of database: 4,572,175
effective search space: 3525146925
effective search space used: 3525146925
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)