BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3198841.2.2
(602 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816396.1|CN816396 HRO4520_C05_F10ZS5 Lib AA071E1X Aven... 232 3e-061
gb|CN818612.1|CN818612 HRO4467_C05_E09ZS5 Lib AA070E1X Aven... 34 0.14
>gb|CN816396.1|CN816396 HRO4520_C05_F10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C05_F10, mRNA sequence
Length = 851
Score = 232 bits (117), Expect = 3e-061
Identities = 343/417 (82%), Gaps = 1/417 (0%)
Strand = Plus / Plus
Query: 173 gatcaatggttcaaaccctgatgactatgagaaatttgagaaagggataatgcactatgg 232
||||||||| || | ||||||||| ||||||| | ||||| || | ||||| |||||
Sbjct: 28 gatcaatggctctagccctgatgattatgagaggctggagaagggattgatgcagtatgg 87
Query: 233 gtgtccacattatagaaggagatgccgcataagagctccttgctgcaatgaaatttttga 292
|||| ||||||| ||||||| ||||||||| |||| || |||||||| || ||||||||
Sbjct: 88 gtgtgcacattaccgaaggaggtgccgcatacgagcaccatgctgcaacgagatttttga 147
Query: 293 ttgccgacactgccacaatgaaactaagaattccattaaaattgataaaatgaagaggca 352
||| || ||||||||||||||| | |||||||| ||||||| |||| || | | ||||
Sbjct: 148 ttgtcggcactgccacaatgaatcaaagaattcgattaaaactgatgtgattaggcggca 207
Query: 353 tgaacttccacgccatgaagtgcagcaggttgtatgctcattgtgtggcactgaacagga 412
||||||| |||| ||||||||||||||||| |||||||||| ||||| |||||||| ||
Sbjct: 208 tgaactttcacgtcatgaagtgcagcaggtcatatgctcattatgtggtactgaacaaga 267
Query: 413 ggtgcgacaagtatgtatcaattgcggtgtttgcatggggaagtacttctgtggtttgtg 472
||| | || |||| |||| || ||||| || ||||| ||||| ||||||| ||||
Sbjct: 268 ggtagggaaaatatgcatcagctgtggtgtatgtatgggaaagtatttctgtgaagtgtg 327
Query: 473 caaactcttcgacgatgatgtctctaaacagcagtatcactgcaacggatgtggaatatg 532
||||||||| || |||||| |||| ||||||||||||||||| | || |||||||||||
Sbjct: 328 caaactctttgatgatgatatctcaaaacagcagtatcactgtcatggttgtggaatatg 387
Query: 533 tagaatcggaggcagggagaattccttccactgttcaaaa-gtggatgttgctattc 588
|||||| || ||| | ||||||| ||| ||||| |||||| |||||||||| |||||
Sbjct: 388 tagaattggtggcggcgagaatttctttcactgctcaaaatgtggatgttgttattc 444
>gb|CN818612.1|CN818612 HRO4467_C05_E09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_C05_E09, mRNA sequence
Length = 289
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 76 tttgatctctctctgct 92
|||||||||||||||||
Sbjct: 104 tttgatctctctctgct 120
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1488
Number of Sequences: 8143
Number of extensions: 1488
Number of successful extensions: 396
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 2
length of query: 602
length of database: 4,702,463
effective HSP length: 16
effective length of query: 586
effective length of database: 4,572,175
effective search space: 2679294550
effective search space used: 2679294550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)