BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3198766.2.1
         (1273 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN821582.1|CN821582  HRO4426_H11_O22ZS5 Lib AA069E1X Aven...    36   0.074
gb|CN814672.1|CN814672  HRO4501_C05_E09ZS5 Lib AA071E1X Aven...    34   0.29 
gb|CN815795.1|CN815795  HRO4510_E12_I24ZS5 Lib AA071E1X Aven...    34   0.29 
gb|CN818529.1|CN818529  HRO4466_F05_L10ZS5 Lib AA070E1X Aven...    34   0.29 

>gb|CN821582.1|CN821582 HRO4426_H11_O22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4426_H11_O22, mRNA
           sequence
          Length = 876

 Score = 36.2 bits (18), Expect = 0.074
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 645 gcgacaagcatcccgagg 662
           ||||||||||||||||||
Sbjct: 115 gcgacaagcatcccgagg 132



>gb|CN814672.1|CN814672 HRO4501_C05_E09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4501_C05_E09, mRNA sequence
          Length = 309

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 172 cgacgacgacgtggtgaaccc 192
           ||||||||||| |||||||||
Sbjct: 45  cgacgacgacggggtgaaccc 65



>gb|CN815795.1|CN815795 HRO4510_E12_I24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4510_E12_I24, mRNA sequence
          Length = 481

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 755 gtcaacaacgactacac 771
           |||||||||||||||||
Sbjct: 376 gtcaacaacgactacac 360



>gb|CN818529.1|CN818529 HRO4466_F05_L10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4466_F05_L10, mRNA sequence
          Length = 884

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 673 gcagatcaccgtcgcct 689
           |||||||||||||||||
Sbjct: 24  gcagatcaccgtcgcct 8



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3158
Number of Sequences: 8143
Number of extensions: 3158
Number of successful extensions: 1059
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 5
length of query: 1273
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1257
effective length of database: 4,572,175
effective search space: 5747223975
effective search space used: 5747223975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)