BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3185308.2.1
(1019 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818773.1|CN818773 HRO4468_D07_G14ZS5 Lib AA070E1X Aven... 36 0.059
gb|CN820772.1|CN820772 HRO4414_F03_K06ZS5 Lib AA069E1X Aven... 36 0.059
gb|CN821389.1|CN821389 HRO4424_G05_N10ZS5 Lib AA069E1X Aven... 36 0.059
>gb|CN818773.1|CN818773 HRO4468_D07_G14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_D07_G14, mRNA sequence
Length = 842
Score = 36.2 bits (18), Expect = 0.059
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 459 atcgccgaggagaaggcc 476
||||||||||||||||||
Sbjct: 128 atcgccgaggagaaggcc 145
>gb|CN820772.1|CN820772 HRO4414_F03_K06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_F03_K06, mRNA
sequence
Length = 757
Score = 36.2 bits (18), Expect = 0.059
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 462 gccgaggagaaggccggc 479
||||||||||||||||||
Sbjct: 28 gccgaggagaaggccggc 45
>gb|CN821389.1|CN821389 HRO4424_G05_N10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_G05_N10, mRNA
sequence
Length = 761
Score = 36.2 bits (18), Expect = 0.059
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 459 atcgccgaggagaaggcc 476
||||||||||||||||||
Sbjct: 32 atcgccgaggagaaggcc 49
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2408
Number of Sequences: 8143
Number of extensions: 2408
Number of successful extensions: 971
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 3
length of query: 1019
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1003
effective length of database: 4,572,175
effective search space: 4585891525
effective search space used: 4585891525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)