BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3148257.2.1
(675 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821537.1|CN821537 HRO4426_D10_G20ZS5 Lib AA069E1X Aven... 42 6e-004
gb|CN815008.1|CN815008 HRO4504_H03_P06ZS5 Lib AA071E1X Aven... 34 0.15
gb|CN815350.1|CN815350 HRO4508_F12_L24ZS5 Lib AA071E1X Aven... 34 0.15
gb|CN815415.1|CN815415 HRO4509_D07_G13ZS5 Lib AA071E1X Aven... 34 0.15
gb|CN817157.1|CN817157 HRO4528_H03_P06ZS5 Lib AA071E1X Aven... 34 0.15
gb|CN817742.1|CN817742 HRO4459_A04_A07ZS5 Lib AA070E1X Aven... 34 0.15
>gb|CN821537.1|CN821537 HRO4426_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D10_G20, mRNA
sequence
Length = 769
Score = 42.1 bits (21), Expect = 6e-004
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gaattcggcacgaggctcgag 21
|||||||||||||||||||||
Sbjct: 649 gaattcggcacgaggctcgag 629
>gb|CN815008.1|CN815008 HRO4504_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4504_H03_P06, mRNA sequence
Length = 769
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 attcggcacgaggctcg 19
|||||||||||||||||
Sbjct: 1 attcggcacgaggctcg 17
>gb|CN815350.1|CN815350 HRO4508_F12_L24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4508_F12_L24, mRNA sequence
Length = 540
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5 tcggcacgaggctcgag 21
|||||||||||||||||
Sbjct: 1 tcggcacgaggctcgag 17
>gb|CN815415.1|CN815415 HRO4509_D07_G13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4509_D07_G13, mRNA sequence
Length = 725
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5 tcggcacgaggctcgag 21
|||||||||||||||||
Sbjct: 1 tcggcacgaggctcgag 17
>gb|CN817157.1|CN817157 HRO4528_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4528_H03_P06, mRNA sequence
Length = 713
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1 gaattcggcacgaggct 17
|||||||||||||||||
Sbjct: 1 gaattcggcacgaggct 17
>gb|CN817742.1|CN817742 HRO4459_A04_A07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4459_A04_A07, mRNA
sequence
Length = 300
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 attcggcacgaggctcg 19
|||||||||||||||||
Sbjct: 2 attcggcacgaggctcg 18
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3833
Number of Sequences: 8143
Number of extensions: 3833
Number of successful extensions: 1652
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1645
Number of HSP's gapped (non-prelim): 7
length of query: 675
length of database: 4,702,463
effective HSP length: 16
effective length of query: 659
effective length of database: 4,572,175
effective search space: 3013063325
effective search space used: 3013063325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)