BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115208.2.1
(1469 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816018.1|CN816018 HRO4516_A04_B08ZS5 Lib AA071E1X Aven... 34 0.34
gb|CN816910.1|CN816910 HRO4526_B06_C12ZS5 Lib AA071E1X Aven... 34 0.34
>gb|CN816018.1|CN816018 HRO4516_A04_B08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_A04_B08, mRNA sequence
Length = 494
Score = 34.2 bits (17), Expect = 0.34
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1317 tatcttaacatttatttacac 1337
||||| |||||||||||||||
Sbjct: 181 tatctgaacatttatttacac 161
>gb|CN816910.1|CN816910 HRO4526_B06_C12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_B06_C12, mRNA sequence
Length = 369
Score = 34.2 bits (17), Expect = 0.34
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1317 tatcttaacatttatttacac 1337
||||| |||||||||||||||
Sbjct: 93 tatctgaacatttatttacac 73
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2847
Number of Sequences: 8143
Number of extensions: 2847
Number of successful extensions: 854
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 2
length of query: 1469
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1452
effective length of database: 4,564,032
effective search space: 6626974464
effective search space used: 6626974464
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)