BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3107376.2.2
(1851 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814743.1|CN814743 HRO4502_A06_A12ZS5 Lib AA071E1X Aven... 34 0.43
gb|CN816303.1|CN816303 HRO4519_C02_F03ZS5 Lib AA071E1X Aven... 34 0.43
gb|CN821555.1|CN821555 HRO4426_F07_K14ZS5 Lib AA069E1X Aven... 34 0.43
>gb|CN814743.1|CN814743 HRO4502_A06_A12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A06_A12, mRNA sequence
Length = 350
Score = 34.2 bits (17), Expect = 0.43
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 295 ccagtcgaaatggtaga 311
|||||||||||||||||
Sbjct: 68 ccagtcgaaatggtaga 52
>gb|CN816303.1|CN816303 HRO4519_C02_F03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_C02_F03, mRNA sequence
Length = 661
Score = 34.2 bits (17), Expect = 0.43
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 1675 ggcgaggaggaggaggacgccgagg 1699
|||||||| ||||||||||| ||||
Sbjct: 100 ggcgaggacgaggaggacgcggagg 76
>gb|CN821555.1|CN821555 HRO4426_F07_K14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_F07_K14, mRNA
sequence
Length = 513
Score = 34.2 bits (17), Expect = 0.43
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 1672 gatggcgaggaggaggaggacgccgagga 1700
|||| |||| |||||||||||| ||||||
Sbjct: 287 gatgacgagcaggaggaggacgacgagga 315
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4273
Number of Sequences: 8143
Number of extensions: 4273
Number of successful extensions: 1136
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 5
length of query: 1851
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1834
effective length of database: 4,564,032
effective search space: 8370434688
effective search space used: 8370434688
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)