BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3071743.2.1
         (586 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816479.1|CN816479  HRO4521_C02_E03ZS5 Lib AA071E1X Aven...    70   2e-012
gb|CN819061.1|CN819061  HRO4459_H01_O01ZS5 Lib AA070E1X Aven...    70   2e-012
gb|CN820504.1|CN820504  HRO4413_B05_C09ZS5 Lib AA069E1X Aven...    36   0.034

>gb|CN816479.1|CN816479 HRO4521_C02_E03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4521_C02_E03, mRNA sequence
          Length = 625

 Score = 69.9 bits (35), Expect = 2e-012
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                       
Query: 486 tgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaattta 545
           |||||| || ||||| || ||||||||||| || ||||| || || ||| | ||||| ||
Sbjct: 361 tgaaaaggctactcctaagggtgtgctgaagcttatgaaagttgatggtttgacaatata 420

                                      
Query: 546 tcatgtgaagagccatctgcagaagta 572
           ||||||||| |||||||||||||||||
Sbjct: 421 tcatgtgaaaagccatctgcagaagta 447



>gb|CN819061.1|CN819061 HRO4459_H01_O01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4459_H01_O01, mRNA sequence
          Length = 717

 Score = 69.9 bits (35), Expect = 2e-012
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                       
Query: 486 tgaaaaagcaactcccaaaggtgtgctgaaactaatgaaggtagaaggtctaacaattta 545
           |||||| || ||||| || ||||||||||| || ||||| || || ||||| ||||| ||
Sbjct: 153 tgaaaaggctactcctaagggtgtgctgaagcttatgaaagttgatggtctgacaatata 212

                                      
Query: 546 tcatgtgaagagccatctgcagaagta 572
           ||||||||| |||||||| ||||||||
Sbjct: 213 tcatgtgaaaagccatctacagaagta 239



>gb|CN820504.1|CN820504 HRO4413_B05_C09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4413_B05_C09, mRNA
           sequence
          Length = 497

 Score = 36.2 bits (18), Expect = 0.034
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 165 tgatggcagcttccatgg 182
           ||||||||||||||||||
Sbjct: 234 tgatggcagcttccatgg 217



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1752
Number of Sequences: 8143
Number of extensions: 1752
Number of successful extensions: 426
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 3
length of query: 586
length of database: 4,702,463
effective HSP length: 16
effective length of query: 570
effective length of database: 4,572,175
effective search space: 2606139750
effective search space used: 2606139750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)