BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3071418.2.1
         (1432 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816722.1|CN816722  HRO4524_A07_B14ZS5 Lib AA071E1X Aven...    42   0.001
gb|CN814875.1|CN814875  HRO4503_D10_H19ZS5 Lib AA071E1X Aven...    34   0.33 
>gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4524_A07_B14, mRNA sequence
          Length = 491

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 647 ggcggcggcgatggtggcggcggcg 671
           ||||||||| |||||||||||||||
Sbjct: 120 ggcggcggctatggtggcggcggcg 144
>gb|CN814875.1|CN814875 HRO4503_D10_H19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4503_D10_H19, mRNA sequence
          Length = 846

 Score = 34.2 bits (17), Expect = 0.33
 Identities = 65/81 (80%)
 Strand = Plus / Minus

                                                                       
Query: 417 attattaccttcccacctgcatcccgtggagatatggcttgcttgcaattcttcaatatc 476
           ||||| ||||||||||| ||||| |  | ||  || |||| |||||| || |||| ||||
Sbjct: 89  attatcaccttcccaccggcatctctggaagggatagcttccttgcattttttcagtatc 30

                                
Query: 477 ttgacacactcatcgtcaccc 497
           |||||||| || || ||||||
Sbjct: 29  ttgacacagtcttcatcaccc 9
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3497
Number of Sequences: 8143
Number of extensions: 3497
Number of successful extensions: 979
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 7
length of query: 1432
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1415
effective length of database: 4,564,032
effective search space: 6458105280
effective search space used: 6458105280
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)