BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3070863.2.1
(992 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814741.1|CN814741 HRO4502_A04_A08ZS5 Lib AA071E1X Aven... 329 3e-090
emb|AJ011905.1|ASA011905 Avena sativa mitochondrial trnY(GT... 34 0.23
>gb|CN814741.1|CN814741 HRO4502_A04_A08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A04_A08, mRNA sequence
Length = 724
Score = 329 bits (166), Expect = 3e-090
Identities = 422/506 (83%), Gaps = 1/506 (0%)
Strand = Plus / Plus
Query: 292 acggccgtcaagagctttgggcacatagatattcttgtctccaatgctgccgcaaatcct 351
||||||||||||| ||||| || || |||||| |||||||||||||||| |||||||||
Sbjct: 3 acggccgtcaagaa-tttggacagattgatattgttgtctccaatgctgctgcaaatcct 61
Query: 352 tctgtagatagcatacttgaaatgaaagagtctgttctcgataagctgtgggatattaac 411
|||||| | ||||||| || ||||||||| | ||||| || ||||| ||||||||||||
Sbjct: 62 tctgtacaaggcatactcgagatgaaagagccagttcttgacaagctatgggatattaac 121
Query: 412 gtcaaggcttctatccttcttattcaggatgctgctcctcacctacggaaggggtcatct 471
||||| || ||||| ||||| ||||||||||||| || || | |||| || || ||
Sbjct: 122 gtcaaagcctctattcttctacttcaggatgctgcaccacatttgaggaacggatcgtcc 181
Query: 472 gtgattattatttcttcaattgctggttacaatccagaacaaggattgacaatgtatggt 531
||||| || |||||||||||||||||||| ||||| ||| | || |||||||||
Sbjct: 182 gtgataataatttcttcaattgctggttataatcctgaagcaactttagggatgtatggt 241
Query: 532 gtcacaaagactgctctctttggtctcacgaaggctcttgctggtgagatgggacccgat 591
|| ||||||||||| || ||||||||||| |||||||||||| ||||||||| || ||
Sbjct: 242 gttacaaagactgccctgtttggtctcacaaaggctcttgctactgagatgggcccaaat 301
Query: 592 actcgtgttaactgtatagcccctggttttgttcctacacggtttgctagtttcctcaca 651
|| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||
Sbjct: 302 acccgtgttaactgtatagctcctggttttgttcctacacgctttgctggtttcctcacg 361
Query: 652 gaaaatgagaccattaggaaagagcttaacgagaggaccaagcttaagagattgggtact 711
||||||||| |||| || ||||| | ||||||| || ||||||||||||||||||
Sbjct: 362 actaatgagacccttagaaatgagctcatggagaggagcacacttaagagattgggtact 421
Query: 712 gtggaagacatggctgcggctgcggcttttctggcgtctgacgacgcatcatacattacg 771
|| |||||||||||| | || || || || ||||| || ||||||||||| ||||||||
Sbjct: 422 gttgaagacatggcttcagccgccgccttcctggcatcggacgacgcatcctacattaca 481
Query: 772 gctgaaaccattgttgttgctggagg 797
|||||||| ||||||||||| |||||
Sbjct: 482 gctgaaacaattgttgttgccggagg 507
>emb|AJ011905.1|ASA011905 Avena sativa mitochondrial trnY(GTA) gene
Length = 208
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 424 atccttcttattcagga 440
|||||||||||||||||
Sbjct: 5 atccttcttattcagga 21
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2341
Number of Sequences: 8143
Number of extensions: 2341
Number of successful extensions: 652
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 4
length of query: 992
length of database: 4,702,463
effective HSP length: 16
effective length of query: 976
effective length of database: 4,572,175
effective search space: 4462442800
effective search space used: 4462442800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)